Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq245 185 2e-41 seq584 143 5e-29 seq2265 140 6e-28 seq10 122 2e-22 SEQ17914 114 2e-20 seq470 100 5e-16 seq309 93.3 8e-14 seq211 93.3 8e-14 >seq245 Length=1203420 Score = 185 bits (204), Expect = 2e-41 Identities = 174/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || || ||||| || |||||||| ||||| || || || | Sbjct 1790 AGGCGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGGGTGCGG 1849 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| ||||| || ||||| || || ||||| ||||| ||||||||| Sbjct 1850 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATGCCTTCC 1909 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| ||| ||| |||||||| | || || ||||||||| Sbjct 1910 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAAGGTG 1969 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 ||||| || ||||| |||||||| ||||| || |||||| || Sbjct 1970 ATGGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATTTTG 2011 Score = 154 bits (170), Expect = 3e-32 Identities = 147/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || ||||| || || | |||||||| | |||||| ||||| || || Sbjct 1592 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATC 1651 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || || || ||||| || ||||| ||||||||||| || ||||| ||||| ||| ||| Sbjct 1652 AGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCA 1711 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 |||||||| | || || |||||||||||||| || || || |||||||| ||||| Sbjct 1712 ATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAG 1771 Query 68454 ATCTGCAT 68461 |||||||| Sbjct 1772 ATCTGCAT 1779 Score = 123 bits (136), Expect = 5e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || || ||||| || |||||||| ||||| || || || | Sbjct 1229 AGGCGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGGGTGCGG 1288 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| ||||| || ||||| || || ||||| || ||||| |||||| Sbjct 1289 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATACCTTCC 1348 Query 68364 TTGTCTTGAATCTTTGCCTTGAC 68386 ||||| || ||||| |||||||| Sbjct 1349 TTGTCCTGGATCTTGGCCTTGAC 1371 >seq584 Length=770825 Score = 143 bits (158), Expect = 5e-29 Identities = 145/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || ||||| || || | |||||||| | |||||| || || || || Sbjct 448349 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATC 448408 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || || || ||||| || || |||||||||||||| || |||||||||||||| ||| Sbjct 448409 AGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCA 448468 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 |||||||| | || || || | |||||||||||| || || | ||| || ||||| Sbjct 448469 ATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTTTTACCAGTTAAGGTTTTCACGAAG 448528 Query 68454 ATCTGCATT 68462 ||||||||| Sbjct 448529 ATCTGCATT 448537 >seq2265 Length=264906 Score = 140 bits (154), Expect = 6e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 68246 GCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCC 68305 ||||| |||||||| || ||| |||||| ||||| || || ||||| | || | || Sbjct 262261 GCGCAGCACCAAGTGCAGGATGGTCTCTTTCTGGATATTGTAGTCGGACTGGGTGCGGCC 262320 Query 68306 ATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTT 68365 ||| || | |||||| || |||||||| || || || ||||||||||| ||||||||||| Sbjct 262321 ATCCTCCAGCTGCTTGCCAGCGAATATCAGCCTCTGCTGGTCGGGTGGGATGCCTTCCTT 262380 Query 68366 GTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGAT 68425 ||||| ||||| |||||||| |||||||||||| | ||| | || | ||||| Sbjct 262381 GTCTTTGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCGTCCTCAAGAGTGAT 262440 Query 68426 GGTTTTTCCCGT 68437 | | || ||||| Sbjct 262441 GCTCTTGCCCGT 262452 >seq10 Length=3625620 Score = 122 bits (134), Expect = 2e-22 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| | | ||||||||| |||||| | | || ||||| | | Sbjct 2012633 AGGCGCAGCACCAGGTGCAAGGCGGACTCTTTCTGGATGCTGCAGTCAGAGAGGGGCAGT 2012692 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC-GGGTGGAATGCCTTC 68362 | |||||| | |||||| || ||||||| || || | ||||| |||||| |||||||| Sbjct 2012693 C-ATCTTCCAGCTGCTTGCCAGCGAATACCAGCCTCTACTGGTCAGGGTGGGATGCCTTC 2012751 Query 68363 CTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGT 68422 ||||||||||||||| || || || |||| ||| ||| | | || || || Sbjct 2012752 CTTGTCTTGAATCTTGGCTTTCACATTCTCGGTGGCGTCACTGGGCTTGACCTCAGGAGT 2012811 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||||| || ||||||||| Sbjct 2012812 GATGGACTTGCCTGTCAGGGTCTTGATGACTATCTGCAT 2012850 >SEQ17914 Length=8076 Score = 114 bits (126), Expect = 2e-20 Identities = 149/201 (74%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 ||||||||||| | |||||| || || || || | ||||| || | || ||| || Sbjct 1829 GTGGACTCTTTCTTGATGTTGTAGTCAGACAGGATGTGGCCATCCTCCAGCTTCTTGCCA 1770 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 | |||||| || || | ||||| ||||| || |||||||||||||| |||| |||||| Sbjct 1769 GTGAATATCAGCCTCTTCTGGTCAGGTGGGATACCTTCCTTGTCTTGGCTCTTGGCCTTG 1710 Query 68385 ACGGCCTCGATGGTGTCT-GCT-GATTCTA-CTTCCAAG-GTGATGGTTTTTCCCGTGAG 68440 || || |||||||| | || | || | ||| |||| |||||||| || || || || Sbjct 1709 ACATTCTTGATGGTGTGTCACTGGGCTCGACCTTTCAAGAGTGATGGTCTTGCCTGTCAG 1650 Query 68441 GGTCTTGACGAATATCTGCAT 68461 ||| || || || |||||||| Sbjct 1649 GGTTTTTACAAAGATCTGCAT 1629 >seq470 Length=855345 Score = 100 bits (110), Expect = 5e-16 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 68242 GAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCC 68301 |||| | ||| || | || || |||||||| |||| ||||| || || || | || | Sbjct 695601 GAAGTCTCAACACAAGATGAAGGGTGGACTCCCTTTGAATGTTGTAGTCAGACAAAGTAC 695660 Query 68302 TCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTT 68361 |||||||| | |||||| || | || || || || || || || || ||||| |||| Sbjct 695661 GACCATCTTCCAGCTGCTTACCAGGAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTT 695720 Query 68362 CCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGG 68421 |||| || |||| | | | |||||| || || ||||| | ||| || || Sbjct 695721 CCTTATCCTGAAGCCTGGACTTGACATTTTCTATAGTGTCCAACGGTTCAACCTCGGGCT 695780 Query 68422 TGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || |||||||||||||| || || |||||||| Sbjct 695781 CAATGGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCAT 695820 >seq309 Length=1089319 Score = 93.3 bits (102), Expect = 8e-14 Identities = 139/201 (69%), Gaps = 16/201 (8%) Strand=Plus/Plus Query 68277 TGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGT 68336 |||||||| ||||| || || || | |||||||| | ||| || ||||| || || | Sbjct 175168 TGGATGTTGTAATCAGAAAGGGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGCTGGGC 175227 Query 68337 CTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATG 68396 || || ||||| |||| || ||||||| || || ||||| ||||| || ||| ||| Sbjct 175228 CTCTGCTGGTCCAGTGGGATATCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATG 175287 Query 68397 GTGTCTGCTGATTCTACTTCCA----------------AGGTGATGGTTTTTCCCGTGAG 68440 ||||| | || || |||| |||||||||| || || || || Sbjct 175288 GTGTCACTGGGCTCCACCTCCAAGGTGATCCACCTCCAAGGTGATGGTCTTGCCAGTCAG 175347 Query 68441 GGTCTTGACGAATATCTGCAT 68461 |||||| ||||| |||||||| Sbjct 175348 GGTCTTCACGAAGATCTGCAT 175368 Score = 89.7 bits (98), Expect = 9e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 68255 CAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAA 68314 || ||| || || ||||| || |||||||| ||||| || || || | |||||||| | Sbjct 175573 CAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGGGTGCGGCCATCTTCCAG 175514 Query 68315 CTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAAT 68374 ||| || ||||| || | | || || ||| | |||| ||||||||||| || | || Sbjct 175513 CTGTTTGCCGGCAAAGCTAGGCCTCTGCTGGCCCAGTGGGATGCCTTCCTTATCCTAGAT 175454 Query 68375 CTTTGCCTTGACGGCCTCGATGGTGTC 68401 ||| ||||| || ||| |||||||| Sbjct 175453 CTTGGCCTTCACATTCTCAATGGTGTC 175427 >seq211 Length=1288492 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 |||||||||||||| ||||| |||||||| |||||||||||| | || || || Sbjct 709140 CCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCA 709199 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||| || ||||| |||||||| ||||| |||||||| Sbjct 709200 AGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 709243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920829885377960