Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq5258 123 2e-23 seq1743 118 9e-22 seq1044 100 2e-16 seq186 100 2e-16 seq806 91.5 1e-13 seq245 91.5 1e-13 seq4084 87.8 2e-12 seq1868 87.8 2e-12 seq470 86.0 5e-12 >seq5258 Length=100039 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | ||||| || |||||||||||||| || Sbjct 763 ACCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGA 822 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| || || || ||||| |||| || | ||| || || ||||| Sbjct 823 CAAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 882 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | ||||| | || ||| || Sbjct 883 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 942 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || || || || || ||||| || || ||||| |||||||| Sbjct 943 CTCGAGCGTGACGGTCTTTCCCGTCAGGGTCTTCACAAAGATCTGCAT 990 >seq1743 Length=339712 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | ||||| || |||||||||||||| || Sbjct 2370 ACCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGA 2311 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||| | |||||| || || || ||||| |||| || | ||| || || ||||| Sbjct 2310 CAAAGTATGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 2251 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | ||||| | || ||| || Sbjct 2250 AATTCCTTCCTTATCCTGGATCTTGGCCTTTATATTTTCTATAGTGTCCGAGGGTTCAAC 2191 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || | |||||| || || |||||||||||||| Sbjct 2190 CTCGAGCGTGATGGTCTTCCTGGTCAGGGTCTTCACAAAAATCTGCAT 2143 >seq1044 Length=525964 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | || || || |||||||||||||| || Sbjct 400051 ACCACCACGGAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 399992 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| || || || ||||| |||| || | ||| || || ||||| Sbjct 399991 CAAAGTACGGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 399932 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || | ||||| |||| | ||| | ||||| || ||| | Sbjct 399931 AATCCCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATTGTGTCCCAGGGTTCAGC 399872 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | | || | || || || || || ||||| |||||||||||||| Sbjct 399871 CTTGAGTGTGATGGTCTTCCCTGTAAGGGTTTTCACAAAAATCTGCAT 399824 >seq186 Length=1368741 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | | || || || ||||||||||| || Sbjct 837454 ACCACCACGGAGTCTCAACACAAGATGAAGGGAGGACTCCTTCTGAATGTTGTAGTCAGA 837395 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| || || || |||| |||| || | ||| || || ||||| Sbjct 837394 CAAAGTACGGCCATCTTCCAGCTGCTTTTCAGCAGAGATCAGTCTCTGCTGATCAGGAGG 837335 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | ||||| | |||||| | Sbjct 837334 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAGC 837275 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || || || || |||||||||||||| Sbjct 837274 CTCGAGCGTGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 837227 >seq806 Length=630265 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | || || || || ||||||||||| || Sbjct 94745 ACCACCACGGAGTCTCAACACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGA 94804 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| || || || ||||| |||| || | ||| || || ||||| Sbjct 94805 CAAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 94864 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| || | | ||| | ||||| | || ||| | Sbjct 94865 AATTCCTTCCTTATCCTGGATCTTGGCCTTAACATTTTCTATAGTGTCTGAGGGTTCAGC 94924 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | | | | || || || || || || || |||||||||||||| Sbjct 94925 CTTGAGCATGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 94972 >seq245 Length=1203420 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 114195 TTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATG 114254 || || |||||||| ||| || || || |||||| || || || || || |||| Sbjct 1592 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATC 1651 Query 114255 AGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCA 114314 || | ||| ||||| || ||||| ||||| ||||| ||||| || | | ||| Sbjct 1652 AGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCA 1711 Query 114315 ACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 114374 | |||||| ||| ||||| |||| ||| | || ||||||||||| || || || || Sbjct 1712 ATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAG 1771 Query 114375 ATCTGCAT 114382 |||||||| Sbjct 1772 ATCTGCAT 1779 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || ||||||||||| | || || |||||| || || || || Sbjct 1811 GTCGACTCCTTCTGGATGTTGTAATCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 1870 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| |||||||| || |||||||| ||||| ||||| || Sbjct 1871 GCAAAGATGAGCCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTC 1930 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || |||| ||| | || ||||| ||||| || Sbjct 1931 ACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTC 1990 Query 114366 TTTACAAAAATCTGCAT 114382 || || || || ||||| Sbjct 1991 TTCACGAAGATTTGCAT 2007 >seq4084 Length=139134 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | | || || || ||||||||||| || Sbjct 21886 ACCACCACGGAGTCTCAACACAAGATGAAGGGAGGACTCCTTCTGAATGTTGTAGTCAGA 21945 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| || || || ||||| |||| || | ||| || || ||||| Sbjct 21946 CAAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGG 22005 Query 114275 AATGCCTTCT-----TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGAT 114329 || |||||| || || ||||| |||| | ||| | ||||| | || | Sbjct 22006 CATTCCTTCTGGATCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGT 22065 Query 114330 TCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || | || | || || || | || || || |||||||||||||| Sbjct 22066 TCAACCTCGAGCGTGATGGTCTTCCCCTTAAGGGTCTTCACAAAAATCTGCAT 22118 >seq1868 Length=317776 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/227 (69%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 114159 CCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATA 114218 ||| | |||||||| || | ||| | ||||| |||||||||||||| || || | Sbjct 104804 CCATGGAGTCTCAACACAAGATGAGGGATGGATTCGTTTTGAATGTTGTAGTCAGACAAA 104863 Query 114219 GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATG 114278 ||||| |||||| || || || ||||| |||| || | ||| || || |||||||| Sbjct 104864 GTACGGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATT 104923 Query 114279 CCTTCTTTGTCGGCAATCTT-TTG--TTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 |||| || || ||||| ||| |||| | ||| | || || | || ||| || Sbjct 104924 CCTTACTTATCCTGGATCTTGTTGGCCTTTACATTTTCTATAGTCTCTGAGGGTTCAACC 104983 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || || || || |||||||| ||||| Sbjct 104984 TCGAGCGTGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATATGCAT 105030 >seq470 Length=855345 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | |||||||| || | ||| | || || || ||||||||||||| || Sbjct 695593 ACCACCATGAAGTCTCAACACAAGATGAAGGGTGGACTCCCTTTGAATGTTGTAGTCAGA 695652 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||||| |||||| || || ||||||| |||| || | ||| || || ||||| Sbjct 695653 CAAAGTACGACCATCTTCCAGCTGCTTACCAGGAAAGATCAGCCTCTGCTGATCAGGAGG 695712 Query 114275 AATGCCTTCTTTGTC 114289 ||| ||||| || || Sbjct 695713 AATTCCTTCCTTATC 695727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419782153148316