Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6788 93.3 8e-14 seq41 89.7 1e-12 >seq6788 Length=68851 Score = 93.3 bits (102), Expect = 8e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 ||||| ||| | ||||||||| || ||||| ||||| ||||| |||||||||||||| Sbjct 50160 ACCTCATCCTTGCTGGTGTACTCCACTATCTCCGTGCACAGGTTGCTGCACTTGATGGTT 50219 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 ||||||| ||| || ||| ||| || |||| || |||||||||||| Sbjct 50220 CCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATG 50270 >seq41 Length=2266706 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || |||||| | || || || || ||||||||||| ||| | || || || || |||||| Sbjct 1099852 GTGGCCTTTGCAGCGGTAGAAGGAATCTTCTTCTCTGGCTCTTTTGCATCGATATTCTGG 1099911 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 |||||| || || | ||||||||| || || || || || || || || ||||| ||| Sbjct 1099912 CTCAAGAAGCGGGGGCTGATGCCCGGCCTTACGTTTTCCAATGAGCTTATTAGCAGAGAC 1099971 Query 42828 GAGG 42831 |||| Sbjct 1099972 GAGG 1099975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943527150917680