Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1743 140 8e-28 seq5258 134 3e-26 seq806 125 2e-23 seq186 125 2e-23 SEQ11613 116 9e-21 seq4084 116 9e-21 seq1868 107 5e-18 >seq1743 Length=339712 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| |||||||| | || ||||||| || || ||||| || || ||||| | Sbjct 2369 CCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAC 2310 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | || ||||||| || ||||| || |||||||| | ||| ||| | || Sbjct 2309 AAAGTATGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 2250 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || | |||||||||| || | ||| || Sbjct 2249 ATTCCTTCCTTATCCTGGATCTTGGCCTTTATATTTTCTATAGTGTCCGAGGGTTCAACC 2190 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| ||||||| |||||| ||||| || || |||||||| Sbjct 2189 TCGAGCGTGATGGTCTTCCTGGTCAGGGTCTTCACAAAAATCTGCAT 2143 >seq5258 Length=100039 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| |||||||| | || ||||||| || || ||||| || || ||||| | Sbjct 764 CCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAC 823 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | || ||||| || |||||||| | ||| ||| | || Sbjct 824 AAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 883 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||||| || | ||| || Sbjct 884 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 943 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||||| ||||| || ||||| ||||| || || |||||||| Sbjct 944 TCGAGCGTGACGGTCTTTCCCGTCAGGGTCTTCACAAAGATCTGCAT 990 >seq806 Length=630265 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| |||||||| | || ||||||| ||| || || || || || ||||| | Sbjct 94746 CCACCACGGAGTCTCAACACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAC 94805 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | || ||||| || |||||||| | ||| ||| | || Sbjct 94806 AAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 94865 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||||| || | ||| | Sbjct 94866 ATTCCTTCCTTATCCTGGATCTTGGCCTTAACATTTTCTATAGTGTCTGAGGGTTCAGCC 94925 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | |||| |||| |||||||| || || ||||| || || |||||||| Sbjct 94926 TTGAGCATGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 94972 >seq186 Length=1368741 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| |||||||| | || ||||||| | | || || || || || ||||| | Sbjct 837453 CCACCACGGAGTCTCAACACAAGATGAAGGGAGGACTCCTTCTGAATGTTGTAGTCAGAC 837394 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | || ||| | || ||||||| | ||| ||| | || Sbjct 837393 AAAGTACGGCCATCTTCCAGCTGCTTTTCAGCAGAGATCAGTCTCTGCTGATCAGGAGGA 837334 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||||| || ||||| | Sbjct 837333 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAGCC 837274 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| |||||||| || || ||||| || || |||||||| Sbjct 837273 TCGAGCGTGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 837227 >SEQ11613 Length=25137 Score = 116 bits (128), Expect = 9e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 288310 GTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATT 288369 || || || ||||| | || ||||| || |||||||| | ||| ||| | || ||| Sbjct 17216 GTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATT 17275 Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| ||||||||||| || || || || |||||||||| || | ||| || ||| Sbjct 17276 CCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCG 17335 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| |||||||| ||||| ||||| || || |||||||| Sbjct 17336 AGAGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAGATCTGCAT 17379 >seq4084 Length=139134 Score = 116 bits (128), Expect = 9e-21 Identities = 165/232 (71%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| |||||||| | || ||||||| | | || || || || || ||||| | Sbjct 21887 CCACCACGGAGTCTCAACACAAGATGAAGGGAGGACTCCTTCTGAATGTTGTAGTCAGAC 21946 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | || ||||| || ||||||| | ||| ||| | || Sbjct 21947 AAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGGC 22006 Query 288367 ATTCCTTCT-----TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||||||| ||||||||||| || || || || |||||||||| || | || Sbjct 22007 ATTCCTTCTGGATCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTT 22066 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||||||||| |||||||| | || ||||| || || |||||||| Sbjct 22067 CAACCTCGAGCGTGATGGTCTTCCCCTTAAGGGTCTTCACAAAAATCTGCAT 22118 >seq1868 Length=317776 Score = 107 bits (118), Expect = 5e-18 Identities = 158/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 288254 GGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGC 288313 ||||||| | || |||||| || ||| ||||| || || ||||| | | || | Sbjct 104808 GGAGTCTCAACACAAGATGAGGGATGGATTCGTTTTGAATGTTGTAGTCAGACAAAGTAC 104867 Query 288314 GTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTT 288373 | || ||||| | || || || || |||||||| | ||| ||| | || ||||||| Sbjct 104868 GGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTT 104927 Query 288374 CTTTATCCTGGA---TTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGA 288430 |||||||||| | || || || || |||||||||| || | ||| || |||| Sbjct 104928 ACTTATCCTGGATCTTGTTGGCCTTTACATTTTCTATAGTCTCTGAGGGTTCAACCTCGA 104987 Query 288431 GCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||| |||||||| || || ||||| || || || ||||| Sbjct 104988 GCGTGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATATGCAT 105030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178614640446654