Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq245 118 1e-21 seq2265 102 9e-17 seq5258 96.9 4e-15 seq1391 93.3 5e-14 seq584 91.5 2e-13 seq577 91.5 2e-13 seq353 91.5 2e-13 seq1299 89.7 6e-13 seq1743 87.8 2e-12 >seq245 Length=1203420 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||||| || || || | || || |||||||| || || || Sbjct 1816 CTCCTTCTGGATGTTGTAATCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 1875 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| | ||||||||| | ||| | || ||||||||| ||| || || | | Sbjct 1876 GATGAGCCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 1935 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| || | ||||| || | |||||||| |||||||| || ||||| || Sbjct 1936 CTCAATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 1995 Query 42197 AAAGATTTGCATTTTCAC 42214 |||||||||||||| || Sbjct 1996 GAAGATTTGCATTTTGAC 2013 >seq2265 Length=264906 Score = 102 bits (112), Expect = 9e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 || |||| |||||| |||| || |||| || || |||||||| || | | | || || Sbjct 262259 AAGCGCAGCACCAAGTGCAGGATGGTCTCTTTCTGGATATTGTAGTCGGACTGGGTGCGG 262318 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110 | || || |||||||| ||||||||||| || | ||||||||||| ||| | || ||| Sbjct 262319 CCATCCTCCAGCTGCTTGCCAGCGAATATCAGCCTCTGCTGGTCGGGTGGGATGCCTTCC 262378 Query 42111 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTG 42170 ||||| |||| || |||| || | | ||||| || | ||| | || | ||| Sbjct 262379 TTGTCTTTGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCGTCCTCAAGAGTG 262438 Query 42171 ATGGTTTTGCCCGT 42184 ||| | |||||||| Sbjct 262439 ATGCTCTTGCCCGT 262452 >seq5258 Length=100039 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 |||||| | ||| | || |||||||||||| ||||| |||| || ||| || | || Sbjct 778 CAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 837 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 || |||||||| ||||| || || |||| |||||| || | || | | ||||| || Sbjct 838 TTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 897 Query 42116 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 42175 | ||| || || | | | | ||||| | ||| || |||| ||||| ||| Sbjct 898 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGACGGT 957 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || ||||| || ||||| |||||||| ||||| || Sbjct 958 CTTTCCCGTCAGGGTCTTCACAAAGATCTGCATCTT 993 >seq1391 Length=410803 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 234037 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 233978 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 233977 TATACTAACGAGGA 233964 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 237444 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 237385 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 237384 TACTAACGAGGA 237373 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 260467 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 260526 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 260527 TACTAACGAGGA 260538 >seq584 Length=770825 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 471383 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 471442 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 471443 ATACTAACGAGGA 471455 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 474598 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 474657 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 474658 TACTAACGAGGA 474669 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42021 TTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATG 42080 || || || ||||| || | ||| || || | || || |||||||| || || || || Sbjct 448349 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATC 448408 Query 42081 AGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC 42140 || | ||||||||| | || | || ||||||||| ||| ||| |||| || | Sbjct 448409 AGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCA 448468 Query 42141 ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAG 42200 | ||||| || | || || || | ||||||||||| || |||| || || || ||| Sbjct 448469 ATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTTTTACCAGTTAAGGTTTTCACGAAG 448528 Query 42201 ATTTGCATTTTC 42212 || |||||| || Sbjct 448529 ATCTGCATTGTC 448540 >seq577 Length=778154 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 501474 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 501415 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 501414 ATACTAACGAGGA 501402 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 504439 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 504380 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 504379 ATACTAACGAGGA 504367 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 516761 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 516702 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 516701 ATACTAACGAGGA 516689 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 525277 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 525336 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 525337 ATACTAACGAGGA 525349 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 531403 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 531462 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 531463 ATACTAACGAGGA 531475 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 560698 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 560757 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 560758 ATACTAACGAGGA 560770 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 574125 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 574184 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 574185 ATACTAACGAGGA 574197 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 581039 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 581098 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 581099 ATACTAACGAGGA 581111 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 474333 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 474392 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 474393 TACTAACGAGGA 474404 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 607011 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 606952 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 606951 TACTAACGAGGA 606940 >seq353 Length=1012744 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 213799 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 213858 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 213859 ATACTAACGAGGA 213871 >seq1299 Length=434673 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 236680 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 236739 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 236740 TACTAACGAGGA 236751 >seq1743 Length=339712 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 |||||| | ||| | || |||||||||||| ||||| |||| || ||| | | || Sbjct 2355 CAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATC 2296 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 ||||||||||| ||||| || || |||| |||||| || | || | | ||||| || Sbjct 2295 TTCTAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 2236 Query 42116 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 42175 | ||| || || | | | | ||||| | ||| || |||| ||||||||| Sbjct 2235 CTGGATCTTGGCCTTTATATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 2176 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | || || ||||| ||||| || ||||| || Sbjct 2175 CTTCCTGGTCAGGGTCTTCACAAAAATCTGCATCTT 2140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542745684523120