Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq245 136 4e-27 seq5258 111 2e-19 seq584 111 2e-19 seq1743 102 8e-17 seq1044 102 8e-17 seq1868 93.3 4e-14 seq806 89.7 5e-13 seq186 87.8 2e-12 seq2265 84.2 2e-11 seq470 84.2 2e-11 >seq245 Length=1203420 Score = 136 bits (150), Expect = 4e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || ||||||||||| | | |||||| | ||||| |||||||||||| Sbjct 1811 GTCGACTCCTTCTGGATGTTGTAATCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 1870 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| || || || ||||| || || || || || ||| Sbjct 1871 GCAAAGATGAGCCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTC 1930 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| || ||||| || | || | ||||||||| |||| || Sbjct 1931 ACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTC 1990 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| ||||||||||| Sbjct 1991 TTCACGAAGATTTGCATTTT 2010 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || || |||||||| || | | |||||| | ||||| ||||||||||||||| | || Sbjct 1592 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATC 1651 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 |||| ||||||||| || ||||| ||||| || || || || || ||| || ||| Sbjct 1652 AGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCA 1711 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 | || |||| || || || || | || | |||||||||||||| || || ||||| Sbjct 1712 ATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAG 1771 Query 64436 ATTTGCAT 64443 || ||||| Sbjct 1772 ATCTGCAT 1779 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || ||||||||||| | | |||||| | ||||| |||||||||||| Sbjct 1250 GTCGACTCCTTCTGGATGTTGTAATCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 1309 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| | ||||||| ||||||||| || ||||| ||||| || || || || || Sbjct 1310 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTT 1362 >seq5258 Length=100039 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||||||||| || | Sbjct 763 ACCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGA 822 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| |||||||| || ||| | || || | |||||| || ||||| Sbjct 823 CAAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 882 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || | || || || || || Sbjct 883 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 942 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || |||||||| || |||| || || || || || ||||| || Sbjct 943 CTCGAGCGTGACGGTCTTTCCCGTCAGGGTCTTCACAAAGATCTGCATCTT 993 >seq584 Length=770825 Score = 111 bits (122), Expect = 2e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || || |||||||| || | | |||||| | ||||| ||||||||||| ||| | || Sbjct 448349 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATC 448408 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 |||| ||||||||| || || || ||||| || || || || ||| ||| ||| ||| Sbjct 448409 AGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCA 448468 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 | || |||| || || || |||| || | ||| || || || || ||||| ||||| Sbjct 448469 ATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTTTTACCAGTTAAGGTTTTCACGAAG 448528 Query 64436 ATTTGCATT 64444 || |||||| Sbjct 448529 ATCTGCATT 448537 >seq1743 Length=339712 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||||||||| || | Sbjct 2370 ACCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGA 2311 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | | ||||| |||||||| || ||| | || || | |||||| || ||||| Sbjct 2310 CAAAGTATGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 2251 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||| | || | || || || || || Sbjct 2250 AATTCCTTCCTTATCCTGGATCTTGGCCTTTATATTTTCTATAGTGTCCGAGGGTTCAAC 2191 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||| | ||||| || || || ||||| ||||| || Sbjct 2190 CTCGAGCGTGATGGTCTTCCTGGTCAGGGTCTTCACAAAAATCTGCATCTT 2140 >seq1044 Length=525964 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||||||||| || | Sbjct 400051 ACCACCACGGAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 399992 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| |||||||| || ||| | || || | |||||| || ||||| Sbjct 399991 CAAAGTACGGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 399932 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || | || || || ||||||| || | ||| || | || || | Sbjct 399931 AATCCCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATTGTGTCCCAGGGTTCAGC 399872 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | | || | |||||| || || | ||||| || ||||| ||||| || Sbjct 399871 CTTGAGTGTGATGGTCTTCCCTGTAAGGGTTTTCACAAAAATCTGCATCTT 399821 >seq1868 Length=317776 Score = 93.3 bits (102), Expect = 4e-14 Identities = 155/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| |||||| | ||||| |||||||||||||| || | | || || | Sbjct 104812 TCTCAACACAAGATGAGGGATGGATTCGTTTTGAATGTTGTAGTCAGACAAAGTACGGCC 104871 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| |||||||| || ||| | || || | |||||| || ||||||||||||| || Sbjct 104872 ATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTACTT 104931 Query 64348 TTCTTGTAT-TTTTTG--CTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 || || || || ||| ||||||| || | || || || || || || | || Sbjct 104932 ATCCTGGATCTTGTTGGCCTTTACATTTTCTATAGTCTCTGAGGGTTCAACCTCGAGCGT 104991 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | |||||| || || | || || || ||||| ||||| || Sbjct 104992 GATGGTCTTCCCCGTAAGGGTCTTCACAAAAATATGCATCTT 105033 >seq806 Length=630265 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || || ||||||||||| || | Sbjct 94745 ACCACCACGGAGTCTCAACACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGA 94804 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| |||||||| || ||| | || || | |||||| || ||||| Sbjct 94805 CAAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 94864 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 ||||||||| || || || || || Sbjct 94865 AATTCCTTCCTTATCCTGGATCTT 94888 >seq186 Length=1368741 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| | || || || ||||||||||| || | Sbjct 837454 ACCACCACGGAGTCTCAACACAAGATGAAGGGAGGACTCCTTCTGAATGTTGTAGTCAGA 837395 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| |||||||| | ||| | || || | |||||| || ||||| Sbjct 837394 CAAAGTACGGCCATCTTCCAGCTGCTTTTCAGCAGAGATCAGTCTCTGCTGATCAGGAGG 837335 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || | || || || || | Sbjct 837334 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAGC 837275 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||| || || | || || || ||||| ||||| || Sbjct 837274 CTCGAGCGTGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCATCTT 837224 >seq2265 Length=264906 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 ||||| || || ||||| || | |||||| | || || ||||||||||| || | Sbjct 262286 TCTTTCTGGATATTGTAGTCGGACTGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAT 262345 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || |||| |||||||||||| || || ||||| || |||| || || ||| ||| | Sbjct 262346 ATCAGCCTCTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTTGATCTTGGCCTTGACATTC 262405 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 || | || |||| || || | || | ||| | | ||||||| |||||| Sbjct 262406 TCGATGGTGTCACTGGGTTCGTCCTCAAGAGTGATGCTCTTGCCCGTCAAA 262456 >seq470 Length=855345 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| || || || ||||||||||||| || | | || || | Sbjct 695605 TCTCAACACAAGATGAAGGGTGGACTCCCTTTGAATGTTGTAGTCAGACAAAGTACGACC 695664 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| |||||||| || | | | || |||| |||||| || |||||||||||||| || Sbjct 695665 ATCTTCCAGCTGCTTACCAGGAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTT 695724 Query 64348 TTCTTG 64353 || || Sbjct 695725 ATCCTG 695730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499215149190920