Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq5258 96.9 3e-15 seq1743 91.5 1e-13 seq6788 89.7 5e-13 seq186 84.2 2e-11 >seq5258 Length=100039 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || | ||| | | | ||||||||||||||||||||||| || |||||| || Sbjct 778 CAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 837 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || || || || || | | |||| || | ||| || || ||||| || ||||| || || Sbjct 838 TTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 897 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || |||| | ||| | ||||| | | || ||||||| ||| | || Sbjct 898 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGACGGT 957 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || ||||| || || ||||| |||||||| Sbjct 958 CTTTCCCGTCAGGGTCTTCACAAAGATCTGCAT 990 >seq1743 Length=339712 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || | ||| | | | ||||||||||||||||||||||| || |||| | || Sbjct 2355 CAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATC 2296 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || || || || || | | |||| || | ||| || || ||||| || ||||| || || Sbjct 2295 TTCTAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 2236 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || |||| | ||| | ||||| | | || ||||||| ||| | || Sbjct 2235 CTGGATCTTGGCCTTTATATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 2176 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||||| || || |||||||||||||| Sbjct 2175 CTTCCTGGTCAGGGTCTTCACAAAAATCTGCAT 2143 >seq6788 Length=68851 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| ||| ||||| | ||| ||||||||||| || ||| |||| || ||||| | Sbjct 50176 TGTACTCCACTATCTCCGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGT 50235 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751 |||| || ||||| || | |||||| ||||||||||||| ||| ||||| Sbjct 50236 TGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTGCCCGTCTC 50287 >seq186 Length=1368741 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| || |||||| || || || || || | | | Sbjct 837420 GACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTTTCAGCA 837361 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| || || ||||| || ||||| || || ||| || |||| Sbjct 837360 GAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 837301 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||||| | || || |||||| ||| | || || || || || || || Sbjct 837300 TTTTCTATAGTGTCCGAGGATTCAGCCTCGAGCGTGATGGTCTTCCCCGTAAGGGTCTTC 837241 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 837240 ACAAAAATCTGCAT 837227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495835657758960