Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq490 158 2e-33 SEQ48808 107 3e-18 >seq490 Length=842669 Score = 158 bits (174), Expect = 2e-33 Identities = 206/285 (72%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| ||||||||||| || ||||| || ||||| | || || || | ||| Sbjct 613952 AAGGGACAGCCCTTCACATTATTGCAGATGAGAGATTGAATTGAGGCAGTGTTGATGATC 613893 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | || ||| | || || || || ||||| || ||||||||| || ||||||||| Sbjct 613892 TTAAAGCCTGCTTCTCCTCCAAACGTGCTTGGCTTCCAGTACTGAGGAGAGCAGATGGGA 613833 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || || || || || | ||| |||| |||||| Sbjct 613832 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCGAAG 613773 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 ||||| | ||||| || ||||| || | | | ||| || || || | || |||| | Sbjct 613772 ATGGCGTCTGGACGAGGCTTTTCCACCAGCAGGGCAGGATACAGCTCCATGGCATCGATG 613713 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | |||||||||| || |||||| || || |||||||| ||| Sbjct 613712 TCACTGTAGAGGGCTTTCAGCTCGGCGGCCATTTCCTTCTCTCCT 613668 Score = 154 bits (170), Expect = 2e-32 Identities = 211/292 (72%), Gaps = 2/292 (1%) Strand=Plus/Minus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 |||||| ||||||||||| ||||| || || || || || || | ||||||| | ||| Sbjct 612867 CCGACCAGCAATCTGTCTGGTGAAGGACTCCACGAACTGTGCGAGCCCGTGCTCCAGGAG 612808 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 |||||| |||||||| | ||| || | | | | |||| | | || ||| |||| Sbjct 612807 GATGGAGTTGTTGTAGAGGAACTGCTTGAAGCTGTACTCCTCCTCCTGGATGTGAAAGGT 612748 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 || |||| ||||| ||||||| | ||||| || ||||| ||||| || || |||||||| Sbjct 612747 GTCGGGCAGCAGAGGATGCCAGTGATAGAGCGTGTTGAATTCGGCGGCGATGCGGTTCTG 612688 Query 9612 GTACTGAAAG-GCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 ||||| || || | | ||| || | ||||||||| || | || | ||| ||||||| Sbjct 612687 ATACTGGAACTGCTGG-CTGAAAAGCAGCTCCGGGTCGAACTTGAGTTTGAAATGGTACC 612629 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 |||| || ||||| || || | | || | ||| || ||||| || || || Sbjct 612628 CGCTCAGGTGCTGCACGTAGTCTTCAATCACAATCTTGATGGTCTCTCCTGT 612577 Score = 132 bits (146), Expect = 7e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 9737 TGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGA 9796 |||| || |||||| ||||||| |||| || ||||| || || ||||| || || || | Sbjct 612428 TGGTCTGGAACAACCGCTCGTCCTCCCACTCGGGGTGCTCCTGCTTGAGCACGTCACACA 612369 Query 9797 CCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAA 9856 | | |||||| || | |||||| || || ||||||||||| | ||||||||| | || | Sbjct 612368 CTCGGTTGTGCTCCCGCAGCCAGATTGTAGCGTACATCATCAGACCCGGCACCAGGCCGA 612309 Query 9857 ACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATAT 9916 | ||||| | ||||| || || ||||| | || || | | ||||| || | ||| | Sbjct 612308 AGACTTCCTGGCCCACAGCGAACCGCAGGTGCTCAGGGATGTGGGGCGGGTAGATCATCT 612249 Query 9917 GCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTGA 9969 |||| || ||| | |||||||| || |||| || || || || | |||| Sbjct 612248 CGGCCTGCGTGTCTCTCACGGTGGGAGGGTACACCTCTCCATCGATGAGCTGA 612196 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| |||||||||| | || ||||| || || ||| Sbjct 610543 TCACCTTTCACGCCCATGGGAGTTGGGCAGTCACTGGCTACTGGAGGAAGGACCCTGGTA 610484 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| || || || || ||||||||| | ||||| || || | | ||||| Sbjct 610483 TAGTAGGAGAGGTTGGAGAAGGCTTCCCAGTTCTTGTAACCGTACTGCACATTGTAAGTT 610424 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||||||||||| | ||||||||| Sbjct 610423 GGTGGACTGTCAATCAAATGTGACCTGGCT 610394 >SEQ48808 Length=1625 Score = 107 bits (118), Expect = 3e-18 Identities = 148/206 (72%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 8978 CTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAAC 9037 ||||||||||||||| |||| || |||||| || ||| ||| || || | ||||||| Sbjct 1625 CTGGGTTTCCAGTACTCCGGCGAACAGATGGGATTTCCCAGGAGGCCCTTGAGGGAAAAC 1566 Query 9038 GGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACG 9097 |||||||| | ||| || || ||||| || ||||||| ||| | ||||| | | Sbjct 1565 GGAGCCCCAATCTCTATCATACTCTCCCCAAAGATGGAGTTGGGCTGGCACTTTTCCAGG 1506 Query 9098 ATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCA 9157 | | || | ||||| || | ||| |||| |||||| || | | | ||||| ||| Sbjct 1505 AGCAGCCCCGGGTAGAACTCCAAAGCATCGATGTCGCCGTACATCTCCTGTAACTCCGCA 1446 Query 9158 GCTATCTCCTTCTCACCTACA-AGCG 9182 || ||||||| ||| ||| || |||| Sbjct 1445 GCCATCTCCTCCTCTCCTGCAGAGCG 1420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723105657246200