Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq245 136 4e-27 seq2265 120 3e-22 seq584 111 2e-19 seq181 86.0 7e-12 >seq245 Length=1203420 Score = 136 bits (150), Expect = 4e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| |||| || |||||| ||||| ||||| || || || ||||| | || || Sbjct 1799 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGGGTGCGGCCATCTTCC 1858 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||||||||| || || | | ||||||||| | || | || ||||||||| | Sbjct 1859 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGG 1918 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||| | || | | ||||| || | ||||| |||| |||||||| ||| Sbjct 1919 ATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTG 1978 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||||||| || || || ||||||||||||||| Sbjct 1979 CCCGTCAGGGTCTTCACGAAGATTTGCATTTTG 2011 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 46406 TTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 46465 || ||||| ||||||||||| || ||||| | || || |||||||||||||| || ||| Sbjct 1592 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATC 1651 Query 46466 AAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC 46525 | | ||||||||| | || | | ||||||||| |||||| ||| | || | Sbjct 1652 AGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCA 1711 Query 46526 ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAG 46585 | ||||| || | || || |||| |||||||| ||||| ||||| || || || ||| Sbjct 1712 ATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAG 1771 Query 46586 ATTTGCAT 46593 || ||||| Sbjct 1772 ATCTGCAT 1779 >seq2265 Length=264906 Score = 120 bits (132), Expect = 3e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 || |||| ||||| |||| | |||| || ||||||||||||||||| | ||||| Sbjct 262259 AAGCGCAGCACCAAGTGCAGGATGGTCTCTTTCTGGATATTGTAGTCGGACTGGGTGCGG 262318 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 | || || ||||||||||| |||||||||| | ||||||||||| || | || ||| Sbjct 262319 CCATCCTCCAGCTGCTTGCCAGCGAATATCAGCCTCTGCTGGTCGGGTGGGATGCCTTCC 262378 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTG 46555 ||||| ||||||| ||||| || | | ||||| || | ||| | || | ||| Sbjct 262379 TTGTCTTTGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCGTCCTCAAGAGTG 262438 Query 46556 ATGGTTTTGCCCGTCA 46571 ||| | |||||||||| Sbjct 262439 ATGCTCTTGCCCGTCA 262454 >seq584 Length=770825 Score = 111 bits (122), Expect = 2e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 46406 TTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 46465 || ||||| ||||||||||| || ||||| | || || ||||||||||| || || ||| Sbjct 448349 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATC 448408 Query 46466 AAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC 46525 | | ||||||||| | || | || ||||||||| |||||| ||||| || | Sbjct 448409 AGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCA 448468 Query 46526 ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAG 46585 | ||||| || | || || || | ||||||||||| || || | ||||| || ||| Sbjct 448469 ATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTTTTACCAGTTAAGGTTTTCACGAAG 448528 Query 46586 ATTTGCATT 46594 || |||||| Sbjct 448529 ATCTGCATT 448537 >seq181 Length=1381130 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 46370 CCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGA 46429 ||||| | |||| |||||| |||| || || || |||||||||||||| || || Sbjct 683451 CCTCTCAGGCGCAGCACCAGGTGCAGGGTGGGCTTTTTCTGGATATTGTAGTCAGACAGG 683510 Query 46430 GTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||||| | || || ||||||||||| ||| |||||| | ||||||||| Sbjct 683511 GTGCGCCCATCCTCCAGCTGCTTGCCAGCGGATATCAGCCTCTGCTGGTC 683560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564752344434360