Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq245 134 1e-26 seq584 120 3e-22 seq2265 91.5 1e-13 >seq245 Length=1203420 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| || || || |||||||| ||||||||| | || || ||| || Sbjct 2010 AAAATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCTTGGAGGTGGAGCCC 1951 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || | || |||| ||||| || || || || | || Sbjct 1950 AGTGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCGGA 1892 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| ||||||| | || ||||| |||||||| || | |||||||| || || Sbjct 1891 CCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGATTA 1832 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| |||| ||||| |||| || || |||| || || Sbjct 1831 CAACATCCAGAAGGAGTCGACCCTGCACCTGGTCCTCCGCCTGAGGGGTGG 1781 Score = 118 bits (130), Expect = 1e-21 Identities = 141/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || |||||| ||| Sbjct 1779 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTCGAGCCCAGT 1720 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || |||||| | ||||| Sbjct 1719 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCA 1661 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 1660 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 1601 Query 38423 CATCCAAAA 38431 |||||| || Sbjct 1600 CATCCAGAA 1592 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| || || |||||| | ||||| ||| ||||||| | || ||||| Sbjct 1362 AAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAG 1303 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | |||||||| || ||||||||||| ||||| |||| ||||| Sbjct 1302 CAGCTGGAAGATGGCCGCACCCTTTCTGATTACAACATCCAGAAGGAGTCGACCCTGCAC 1243 Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| || || |||| || ||| Sbjct 1242 CTGGTCCTCCGCCTGAGGGGTGGC 1219 >seq584 Length=770825 Score = 120 bits (132), Expect = 3e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| ||||| | || || |||||||||||| | || |||||| ||| Sbjct 448537 AATGCAGATCTTCGTGAAAACCTTAACTGGTAAAACCATCACCCTAGAGGTCGAGCCCAG 448478 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | ||| |||| ||||| || || || ||| | ||||| Sbjct 448477 TGACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCA 448418 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | |||||||| |||||||| || | |||||||| ||||||||| Sbjct 448417 GCAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 448358 Query 38423 CATCCAAAA 38431 |||||| || Sbjct 448357 CATCCAGAA 448349 >seq2265 Length=264906 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 |||||||| | |||||| | || | ||| ||| |||| | | | | | || | Sbjct 262452 ACGGGCAAGAGCATCACTCTTGAGGACGAACCCAGTGACACCATCGAGAATGTCAAGGCC 262393 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || ||| ||||| || || || || ||||||| ||| |||| || | ||| ||||| Sbjct 262392 AAGATCAAAGACAAGGAAGGCATCCCACCCGACCAGCAGAGGCTGATATTCGCTGGCAAG 262333 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | ||||||| ||||||||| ||||| || || | | ||||| Sbjct 262332 CAGCTGGAGGATGGCCGCACCCAGTCCGACTACAATATCCAGAAAGAGACCATCCTGCAC 262273 Query 38448 TTGGTGCTGCGTTTG 38462 ||||||||||| ||| Sbjct 262272 TTGGTGCTGCGCTTG 262258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499742695157120