Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq376 107 8e-18 seq72 107 8e-18 seq1743 96.9 1e-14 seq1062 93.3 2e-13 seq5258 91.5 6e-13 seq1868 87.8 7e-12 seq806 87.8 7e-12 SEQ11613 84.2 9e-11 seq2164 84.2 9e-11 >seq376 Length=984990 Score = 107 bits (118), Expect = 8e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| |||| || | || || || ||||| |||||||| | || || || ||||| Sbjct 519980 GTTACCAATGCTGTGGTCACAGTGCCAGCTTACTTCAATGACTCTCAGCGACAGGCAACA 519921 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| ||||||||| | ||||| ||||||||||| |||||||| || || Sbjct 519920 AAAGATGCTGGAACTATTGCTGGCCTTAATGTACTTCGAATTATCAATGAACCAACTGCT 519861 Query 451433 GCTGCTCTAGCATATGG 451449 |||||| | || ||||| Sbjct 519860 GCTGCTATTGCTTATGG 519844 Score = 96.9 bits (106), Expect = 1e-14 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 ||| |||| ||||||||||| ||||||| || ||||| ||||| | ||| ||||||| Sbjct 520717 GCAGTTGGCATTGATCTTGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCATGGAAAG 520658 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 || |||||||| || |||||||| || ||||| ||||| | || ||||||| Sbjct 520657 GTGGAAATTATTGCCAATGACCAGGGTAACCGAACCACTCCGAGCTATGTTGCTTTTACG 520598 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAAA 451066 || ||||| | || | ||| | ||||| ||| Sbjct 520597 GACACAGAACGTCTAATTGGGGATGCTGCGAAA 520565 >seq72 Length=1883394 Score = 107 bits (118), Expect = 8e-18 Identities = 172/245 (70%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106 |||||| | |||||||||||| || || |||||||| ||| || | || | || | Sbjct 1390503 TGCAATCTCTGGCACTAGGGGGTCATCTGGATTTGGATCA--CATAGCAGTGAACAAATG 1390446 Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166 |||||||| |||||| ||| |||| || || ||| | | || |||||| | | Sbjct 1390445 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCGTAGAATATCAAGA 1390386 Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226 ||||| || || | |||||| |||||||||||| | ||| ||||| || ||| Sbjct 1390385 CAAATGCTGCCATTACTGTTAATATGTGGATGATAAATTGTTGTTGTAAATGCAACCTTA 1390326 Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCA 96286 || || || | ||||||||| |||||||| |||| || |||||| ||||| | | Sbjct 1390325 GGTGGTTTGAAGGGATAGTCTGTAGGAAAAGGAATTGTCAAAAAGAATACACCACCTTGA 1390266 Query 96287 TAGGG 96291 || || Sbjct 1390265 TATGG 1390261 >seq1743 Length=339712 Score = 96.9 bits (106), Expect = 1e-14 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || ||||| | || || || || || || |||||| | || Sbjct 2143 ATGCAGATTTTTGTGAAGACCCTGACCAGGAAGACCATCACGCTCGAGGTTGAACCCTCG 2202 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| ||| || || || || |||||||||||||||||||||||||| Sbjct 2203 GACACTATAGAAAATATAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 2262 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || | || || || || |||||||| |||||| | || || || Sbjct 2263 CAGAGACTGATCTTTGCTGGAAAGCAGCTAGAAGATGGCCATACTTTGTCTGACTACAAC 2322 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| | || || ||||| Sbjct 2323 ATTCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACT 2360 >seq1062 Length=516367 Score = 93.3 bits (102), Expect = 2e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || ||||| ||||| || || || ||||| ||||||| |||||| | |||||||||||| Sbjct 132660 GCCACTAAGGATGCTGGCCAGATAGCTGGGCTAAATGTACTTCGAGTGATTAATGAACCT 132719 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 ||||| |||||||| || ||||| || | ||||| |||| Sbjct 132720 ACAGCTGCTGCTCTGGCCTATGGTCTCGACAAATCTGAAGA 132760 >seq5258 Length=100039 Score = 91.5 bits (100), Expect = 6e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||| || || || | || || || |||||| | || Sbjct 990 ATGCAGATCTTTGTGAAGACCCTGACGGGAAAGACCGTCACGCTCGAGGTTGAACCCTCG 931 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | || || || || |||||||||||||||||||||||||| Sbjct 930 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 871 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || | || || || || |||||||| | |||||| | || || || Sbjct 870 CAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAAC 811 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| | || || ||||| Sbjct 810 ATTCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACT 773 >seq1868 Length=317776 Score = 87.8 bits (96), Expect = 7e-12 Identities = 137/194 (71%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| ||||||| || || || || || || || || || || || || |||||| | || Sbjct 105030 ATGCATATTTTTGTGAAGACCCTTACGGGGAAGACCATCACGCTCGAGGTTGAACCCTCA 104971 Query 391110 GATAACATTGAAGCTATTAAA--CAAAAA-ATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 || | || ||| | | || ||| || || || |||||| ||||||||||||||||| Sbjct 104970 GAGACTATAGAAAATGTAAAGGCCAACAAGATCCAGGATAAGTAAGGAATTCCTCCTGAT 104911 Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTAT 391226 || || | | || || | ||||| || || |||||||| | |||||| | || || Sbjct 104910 CAGCAGAGACTGATCTTTGCTGGGAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 104851 Query 391227 AATATTGATAAGGA 391240 || ||| | || || Sbjct 104850 AACATTCAAAACGA 104837 >seq806 Length=630265 Score = 87.8 bits (96), Expect = 7e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || || || || || || || | || | | |||| | || Sbjct 94972 ATGCAGATTTTTGTGAAGACCCTTACGGGGAAGACCATCATGCTCAAGGCTGAACCCTCA 94913 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | |||| || || || |||||||||||||||||||||||||| Sbjct 94912 GACACTATAGAAAATGTTAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 94853 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || | || || || || |||||||| | |||||| | || || || Sbjct 94852 CAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAAC 94793 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| | || || ||||| Sbjct 94792 ATTCAGAAGGAGTCCACCCTTCATCTTGTGTTGAGACT 94755 >SEQ11613 Length=25137 Score = 84.2 bits (92), Expect = 9e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||| || || || || ||||| || |||||| | || Sbjct 17379 ATGCAGATCTTTGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTTGAACCCTCG 17320 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | || || || || |||||||||||||||||||||||||| Sbjct 17319 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 17260 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTA 391225 || | | || || | || || || || |||||||| | |||||| | || || Sbjct 17259 CAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTA 17204 >seq2164 Length=276870 Score = 84.2 bits (92), Expect = 9e-11 Identities = 167/240 (70%), Gaps = 13/240 (5%) Strand=Plus/Plus Query 451892 ATTGATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTG 451951 ||| |||| ||||| || || | |||||||| |||| || || ||||| | | || Sbjct 35447 ATTCATGATATTGTTCTGGTCAGTGGTTCTACCAGAATCCCCAAGATTCAGAAGCTTCTG 35506 Query 451952 T----CTTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGT 452007 |||||| ||||| |||| ||||| | | || || ||||||||||| Sbjct 35507 CAAGACTTCTTCAAC----GGAAAGGAACTGAATAAGAACATTAACCCCGATGAAGCTGT 35562 Query 452008 TGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGG-TTCAGATGATGA-AAAATTA 452065 ||| |||||||| || |||| ||||| ||| || |||| || || ||| || |||| Sbjct 35563 TGCTTATGGTGCAGCTGTTCCGGCAGCCATTTTATCAGGAGACAAAT-CTGAGAACATTA 35621 Query 452066 GGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGA 452125 | ||| | || | | ||||| || ||||| || | |||| ||||||| ||||||||| Sbjct 35622 AG-GATTTGTTGCTGTTGGATGTCACTCCTCTTTC-CCTGGAATTGAAACTGCTGGTGGA 35679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1973976981427644