Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq376 114 1e-19 seq2429 95.1 9e-14 seq912 95.1 9e-14 >seq376 Length=984990 Score = 114 bits (126), Expect = 1e-19 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| || ||||| || || |||||| | || | ||| || ||||| ||||| ||| Sbjct 520528 CAAAAACTGTGTTGGTGGGGTTCATTGCAACCTGGTTTTTCGCAGCATCCCCAATTAGAC 520587 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||||||| || ||||| | |||||| ||||| || || ||||| || ||||| |||| Sbjct 520588 GTTCTGTGTCCGTAAAAGCAACATAGCTCGGAGTGGTTCGGTTACCCTGGTCATTGGCAA 520647 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 ||||||| || || |||| || | ||||| ||||| | || || || | ||||| Sbjct 520648 TAATTTCCACCTTTCCATGCTGGAAGACACCCACACAGGAGTAGGTGGTGCCAAGATCAA 520707 Query 518703 TACCAA 518708 | |||| Sbjct 520708 TGCCAA 520713 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || ||||| | ||||| |||| ||||||||||||||||||||| ||||||| | ||| Sbjct 519832 TTCTTATCTAAGCCATAAGCAATAGCAGCAGCAGTTGGTTCATTGATAATTCGAAGTACA 519891 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| |||||||| |||| |||||||| || || |||| || || || || || || Sbjct 519892 TTAAGGCCAGCAATAGTTCCAGCATCTTTTGTTGCCTGTCGCTGAGAGTCATTGAAGTAA 519951 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || || || | || |||| Sbjct 519952 GCTGGCACTGTGACCACAGCAT 519973 Score = 89.7 bits (98), Expect = 4e-12 Identities = 355/552 (64%), Gaps = 14/552 (3%) Strand=Plus/Plus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 |||||||| ||||||||||||||||| |||| | | || |||| ||| || ||||| Sbjct 519187 GCACCATAAGCAACAGCTTCATCAGGGTTAATGCTCTTGTTCAGTTCTTTCCCGTTGAAG 519246 Query 517670 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 || | | ||||| | ||| | ||| || || | || || || ||||| | ||||| Sbjct 519247 AAGTCTTGCAGAAGCT-TCTGAATCTTGGGGATTCTAGTAGAACCACCAACCAGAACAAT 519305 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 ||||| | |||||| || || ||||| | ||| | | ||||| || || || || Sbjct 519306 GTCATGAATCTGTGACTTGTCAAGTTTGGCATCGCGAAGGGCCTTTTCTACAGGATCCAG 519365 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 517848 | | |||| ||| | | | ||| || ||| ||| | |||| || | || Sbjct 519366 TGTGCCACGGAACAGGTCAGCATTCAATTCCTCAAATCGAGCACGGGTAATAGAGGTATA 519425 Query 517849 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 517908 | |||||||| || | | |||||||| ||||| | | || || || || || Sbjct 519426 GAAGTCAATTCCCTCATAGAGAGAATCAATCTCAATACTGGCCTGGGTGCTGGAGGAGAG 519485 Query 517909 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTC-GTAAG---GCTTTTGCTGATT 517964 | || ||||| |||||||| || || | || | | | || ||| | || | | Sbjct 519486 GGTGCGCTTAGCCCGTTCACAGGCAGTACGGAGACGCCTGACAGCTCTCTTGTTCTCACT 519545 Query 517965 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACG 518022 ||| || | || | |||| || || || ||| | ||| | || | || Sbjct 519546 GAT----GTCCTTCTTGTGCTTTCGTTTAAACTCAGCAATGAA--ATGGTTGACCATTCG 519599 Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 |||||||| ||||| || ||||| | || | ||| | || | | | |||| |||| Sbjct 519600 GTTATCAAAGTCTTCTCCACCCAAGTGGGTGTCTCCAGCTGTGGATTTCACTTCAAAAAT 519659 Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 ||||| |||| | | | | |||||| || ||||| |||| |||||||| || Sbjct 519660 GCCATCCTCAATTGTGAGGATTGACACATCAAAAGTACCACCTCCCAAGTCAAAAATCAG 519719 Query 518143 TACATTCATTTC 518154 || ||| |||| Sbjct 519720 CACGTTCCTTTC 519731 >seq2429 Length=246919 Score = 95.1 bits (104), Expect = 9e-14 Identities = 215/318 (68%), Gaps = 18/318 (6%) Strand=Plus/Plus Query 517087 GTGAGTATAATTTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCT 517144 || || ||| |||| |||||||| | | |||| || ||| ||| ||| || ||| Sbjct 213416 GTAAGCATAGCTTTCCAATTCATTCCTGGTGTCAAT-GC-GCTCTTTGAGCTTTTTGTCT 213473 Query 517145 GCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCT----TCAGAGAA 517200 | || | || | | ||| || ||| ||| || ||||||| || ||||| | Sbjct 213474 TCCTCAGCGAACTTCTCAGCATCATTAACCATCCTTTCAATTTCTTCAGGAGTCAGACGA 213533 Query 517201 TCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGA---TTTATCAGC 517257 | || | | ||| ||||| || || || || ||||||| || ||| || | Sbjct 213534 TTTT----GGTCATTGGTAATTGTGATTTTGTT---TTTGTTTCCTGTACCTTTGTCTTC 213586 Query 517258 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 517317 || ||||| |||||||||||| |||| | ||||| |||||||||||||| || || Sbjct 213587 AGCTGTCACTCGAAGAATACCATTAACATCTATCTCAAAAGTGACTTCAATTTGGGGTAC 213646 Query 517318 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 517377 ||| | ||||||| || ||||| || || |||||| |||||| || || ||||| Sbjct 213647 CCCACGGGGAGCAGGAGGAATCCCAGTCAGATCAAATGTACCCAGAAGATGGTTGTCTTT 213706 Query 517378 AGTGAATTTTCGTTCACC 517395 || | ||||||||| Sbjct 213707 TGTTAGGGGTCGTTCACC 213724 >seq912 Length=585927 Score = 95.1 bits (104), Expect = 9e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| || || || ||||| ||||| ||||| ||||||||| | || || | ||||| Sbjct 555159 TGTTGTGGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCAAAGTTAT 555100 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| ||||||||| | || || ||||| || ||||| || ||||| || || Sbjct 555099 TCATTATGGCGCTCCCAAGGAAATGGAGTCCTATTACCAGGAAATCGGCAGAGCTGGCCG 555040 Query 367113 TGATGGA 367119 ||||||| Sbjct 555039 TGATGGA 555033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3777408664735858