Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value SEQ15771 89.7 4e-13 seq2170 89.7 4e-13 seq55 89.7 4e-13 SEQ10962 86.0 5e-12 seq873 86.0 5e-12 >SEQ15771 Length=10460 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || || | ||||| || | ||| || ||| |||| Sbjct 5439 CCTCATGCTGCACATGGCATGTGTAATGCTGCTCCTTCCCAGGAGGCACCACTACAGCTG 5498 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || | || ||||| ||||| || ||| | | | Sbjct 5499 CCCACTTCTGGAAGGTTCCATCCCCTGAAGGCCTGGTGTCCACAAGCTCCATGTCCTGGG 5558 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | ||| ||||| || | | | ||||||||||| |||||||| || Sbjct 5559 TCAGGTCCTCCCCATCCAACTGCCAGGTCAGGCTGATGTCCGCAGGGTAGAAGCCCAGGG 5618 Query 529 CCCAACA 535 |||| || Sbjct 5619 CCCAGCA 5625 >seq2170 Length=275818 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| ||||| || || ||| | ||||||| |||||| || | | |||| Sbjct 267059 CCTCATGCAGCACATGGCACGTGTATCTCTGCTCTTCTCCTGCAGGCACCACCACAGCTG 267000 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || || ||||| || || || ||||| ||||| || ||| | | | Sbjct 266999 CCCACTTCTGGAAGGTCCCATCCCCTGCAGGCCTGGTGTCCACAAGCTCCATGTCCTGGG 266940 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | ||| ||||| || | || ||||| ||||| |||||||| || Sbjct 266939 TCAGGTCCTCCCCATCCAACTGCCAGGTCAGGGAGATGTCAGCAGGGTAGAAGCCCAGGG 266880 Query 529 CCCAACA 535 |||| || Sbjct 266879 CCCAGCA 266873 Score = 86.0 bits (94), Expect = 5e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| ||||| || || ||| | ||||||| |||||| || | | |||| Sbjct 231717 CCTCATGCAGCACATGGCACGTGTATCTCTGCTCTTCTCCTGCAGGCACCACCACAGCTG 231658 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || || ||||| || | || ||||| ||||| | ||| | | | Sbjct 231657 CCCACTTCTGGAAGGTCCCATCCCCTGAGGGCCTGGTGTCCACAAGTTCCATGTCCTGGG 231598 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | || | ||||| || | | | ||||||||||| |||||||| || Sbjct 231597 TCAGGTCCTCCTCATCCCTCTGCCAGGTCAGGCTGATGTCCGCAGGGTAGAAGCCCAGGG 231538 Query 529 CCCAACA 535 |||| || Sbjct 231537 CCCAGCA 231531 >seq55 Length=2056062 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || || | ||||| || | | ||| || | | |||| Sbjct 383180 CCTCATGGTGCACATGGCACGTGTAATCCTGCTCCTTCTCAGGAGGCACCACCACAGCTG 383121 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || || || ||||| |||||| || ||| | | | Sbjct 383120 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTGTCCACCAGCTCCATGTCCTGGG 383061 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | ||| ||||| | | || ||||| ||||| |||||||| || Sbjct 383060 TCAGGTCCTCCCCATCCAACTGCCAGATCAGGGAGATGTCAGCAGGGTAGAAGCCCAGGG 383001 Query 529 CCCAACA 535 |||| || Sbjct 383000 CCCAGCA 382994 Score = 86.0 bits (94), Expect = 5e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| ||||| || | ||||| || | || || | | |||| Sbjct 341091 CCTCATGGTGCACATGGCAGGTGTAATGCTGCTCCTTCCCAGGAGACACCACCACAGCTG 341032 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || || || ||||| |||||| || ||| | | | Sbjct 341031 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACCAGCTCCATGTCCTGGG 340972 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | || | ||||| | | || ||||| ||||| |||||||| || Sbjct 340971 TCAGGTCCTCCCCATCCCTCTGCCAGATCAGGGAGATGTCAGCAGGGTAGAAGCCCAGGG 340912 Query 529 CCCAACA 535 |||| || Sbjct 340911 CCCAGCA 340905 >SEQ10962 Length=28393 Score = 86.0 bits (94), Expect = 5e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || || | ||||| || | ||| || | | |||| Sbjct 26347 CCTCATGCTGCACATGGCATGTGTAATGCTGCTCCTTCCCAGGAGGCACCACCACAGCTG 26406 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || | || ||||| |||||| || ||| | | | Sbjct 26407 CCCACTTCTGGAAGGTTCCATCCCCTGAAGGCCTGGTCTCCACCAGCTCCATGTCCTGGG 26466 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | || | ||||| | | | | ||||| ||||| |||||||| || Sbjct 26467 TCAGGTCCTCCCCATCCCTCTGCCAGATCAGGCTGATGTCAGCAGGGTAGAAGCCTAGGG 26526 Query 529 CCCAACA 535 ||||||| Sbjct 26527 CCCAACA 26533 >seq873 Length=601348 Score = 86.0 bits (94), Expect = 5e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 346 ATGCCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGG 405 |||| ||||| || |||||||| || ||| | |||| | | ||| || | | | Sbjct 71923 ATGCTTCATGGTTCACATGACATGTGTATCTCAGCTCCTCTCCAGAAGGAACCACCACAG 71864 Query 406 CTGCCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCAT 465 ||||||||||||| || |||||||| || || || ||||| |||||| || ||| | | Sbjct 71863 CTGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTGTCCACCAGCTCCATTTCCT 71804 Query 466 CAGT-CAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCA 524 || |||| || |||| | ||||| || | || ||||| ||||| |||||||| Sbjct 71803 GGGTGTGGTTGTTCCCATCCC-TCTGCCAGGTCAGGGAGATGTCAGCAGGGTAGAAGCCC 71745 Query 525 GTGGCCCAACA 535 |||||| || Sbjct 71744 AGGGCCCAGCA 71734 Score = 86.0 bits (94), Expect = 5e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || || | ||||| || | ||| || | | |||| Sbjct 137570 CCTCATGCTGCACATGGCACGTGTAATGCTGCTCCTTCCCAGGAGGCACCACCACAGCTG 137511 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || | || ||||| |||||| || ||| | | | Sbjct 137510 CCCACTTCTGGAAGGTTCCATCCCCTGAAGGCCTGGTCTCCACCAGCTCCATGTCCTGGG 137451 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | || | ||||| | | | | ||||| |||||||||||||| || Sbjct 137450 TCAGGTCCTCCCCATCCCTTTGCCAGATCAGGCTGATGTCAGCAGGATAGAAGCCCAGGG 137391 Query 529 CCCAACA 535 |||| || Sbjct 137390 CCCAGCA 137384 Score = 86.0 bits (94), Expect = 5e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || || | ||||| || | ||| || | | |||| Sbjct 159828 CCTCATGCTGCACATGGCACGTGTAATGCTGCTCCTTCCCAGGAGGCACCACCACAGCTG 159769 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || | || ||||| |||||| || ||| | | | Sbjct 159768 CCCACTTCTGGAAGGTTCCATCCCCTGAAGGCCTGGTCTCCACCAGCTCCATGTCCTGGG 159709 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | ||| ||||| || | || ||||| ||||| |||||||| || Sbjct 159708 TCAGGTCCTCCCCATCCAACTGCCAGGTCAGGGAGATGTCAGCAGGGTAGAAGCCCAGGG 159649 Query 529 CCCAACA 535 |||| || Sbjct 159648 CCCAGCA 159642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397413722905608