Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq245 134 3e-26 seq584 113 1e-19 seq470 111 3e-19 SEQ15051 93.3 9e-14 seq181 87.8 4e-12 seq197 86.0 1e-11 seq8342 84.2 5e-11 seq309 84.2 5e-11 >seq245 Length=1203420 Score = 134 bits (148), Expect = 3e-26 Identities = 159/214 (74%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || |||||||| | ||| || | |||||||| Sbjct 1799 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGGGTGCGGCCATCTTCC 1858 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || || |||||||| ||||| || Sbjct 1859 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGG 1918 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| ||||||||||||||||| ||| ||||| || | ||| | ||| Sbjct 1919 ATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCCACCTCCAAGGTGATGGTC 1975 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || |||| || || ||||| | |||||||| Sbjct 1976 TTGCCCGTCAGGGTCTTCACGAAGATTTGCATTT 2009 Score = 102 bits (112), Expect = 2e-16 Identities = 138/191 (72%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| || || | |||||||| |||||||| || || ||||| Sbjct 1592 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATC 1651 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || | || ||||| || ||||| ||||| ||||| || || || ||| ||||||||| Sbjct 1652 AGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCA 1711 Query 195073 ATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACG 195129 |||||||| ||| || || || | ||| | ||||| || |||| || || ||| Sbjct 1712 ATGGTGTC---ACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 1768 Query 195130 AACACTTGCAT 195140 || | ||||| Sbjct 1769 AAGATCTGCAT 1779 >seq584 Length=770825 Score = 113 bits (124), Expect = 1e-19 Identities = 141/192 (73%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| || || | |||||||| |||||||| || || ||||| Sbjct 448349 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATC 448408 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || | || ||||| || || |||||||| ||||| || || ||| |||||| |||||| Sbjct 448409 AGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCA 448468 Query 195073 ATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACG 195129 |||||||| ||| || || || ||||| | || || || || || ||||| ||| Sbjct 448469 ATGGTGTC---ACTGGGCTCGACCTCTAGGGTGATGGTTTTACCAGTTAAGGTTTTCACG 448525 Query 195130 AACACTTGCATT 195141 || | |||||| Sbjct 448526 AAGATCTGCATT 448537 >seq470 Length=855345 Score = 111 bits (122), Expect = 3e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| ||||| |||||||| ||||||| ||||| || | | ||| | Sbjct 695603 AGTCTCAACACAAGATGAAGGGTGGACTCCCTTTGAATGTTGTAGTCAGACAAAGTACGA 695662 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||||||||| | ||||| || | || || || |||||||| ||||| Sbjct 695663 CCATCTTCCAGCTGCTTACCAGGAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 695722 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCC 195081 || || |||| | |||||| || || || |||||| Sbjct 695723 TTATCCTGAAGCCTGGACTTGACATTTTCTATAGTGTCC 695761 >SEQ15051 Length=11622 Score = 93.3 bits (102), Expect = 9e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| ||||| ||||||| ||||||| ||||| || | | ||| | Sbjct 5699 AGTCTCAACACAAGATGAAGGGTGGACTTCCTTTGAATGTTGTAGTCAGACAAAGTACGG 5640 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 | || ||| ||||||||||| || || | || | || || || |||||||| ||||| Sbjct 5639 CGATATTCCAGCTGCTTACCAGCAAAAAACAGCCCCTGCTGATCAGGAGGAATTCCTTCC 5580 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || | || || ||| ||||| || ||| |||| || ||| || || || || Sbjct 5579 TTATCCTTGATCTTAACCTTTACGTTTTCTATGATGTCTGAGGGTTCAACCTCGAGTGT 5521 >seq181 Length=1381130 Score = 87.8 bits (96), Expect = 4e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || || ||||| || |||| || ||| || |||||||| || | || || Sbjct 683453 TCTCAGGCGCAGCACCAGGTGCAGGGTGGGCTTTTTCTGGATATTGTAGTCAGACAGGGT 683512 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||| || |||||||| || ||| | || || | || ||||| || | ||||| Sbjct 683513 GCGCCCATCCTCCAGCTGCTTGCCAGCGGATATCAGCCTCTGCTGGTCAGGTGAGATGCC 683572 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGG 195076 ||||||| |||| || || ||| | ||||| |||| Sbjct 683573 TTCTTTGGCTTGGATCTTGGCTTTGGCATTCTCCATGG 683610 >seq197 Length=1344895 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| ||||| |||||||| |||||||| || | || | | || Sbjct 265378 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTACAGTCAGACAAAGCATGG 265319 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||||| ||||||||||| || ||||| |||| || || | |||||||| ||||| Sbjct 265318 CCATCTTGCAGCTGCTTACCAGCAAAGATCAGTCTCTGCTGATGAGGAGGAATTCCTTCC 265259 Query 195043 TT 195044 || Sbjct 265258 TT 265257 >seq8342 Length=48445 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| ||||| ||| ||| |||| ||| ||||| || | | | | Sbjct 15304 AGTCTCAACACAAGATGAAGGGTGTGCTCCTTTTAAATGTTGTAGTC----AAATTACAG 15249 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 | |||||| ||||||||||| || |||| || | || || | | |||||| ||||| Sbjct 15248 CTATCTTCCAGCTGCTTACCAGCAAAGAGCAGCCTCTGCTGATTAGAAGGAATTCCTTCC 15189 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || | || ||| | |||| || || || || Sbjct 15188 TTATCCTGGATCTTGGCCTTTACATTTTCTCTAGTATCCAAGTTTTCAACCTCCAGTGTG 15129 Query 195103 ACCGTCTTTCCTGT 195116 | ||||| ||||| Sbjct 15128 ATGGTCTTCCCTGT 15115 >seq309 Length=1089319 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 ||||| || || ||||| || || || |||||||| | ||| || | |||||||| ||| Sbjct 175572 AGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGGGTGCGGCCATCTTCCAGC 175513 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 || || || || ||| || | | || ||| | | || |||||||| || || | || Sbjct 175512 TGTTTGCCGGCAAAGCTAGGCCTCTGCTGGCCCAGTGGGATGCCTTCCTTATCCTAGATC 175453 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTC 195080 || ||| || |||||||||||||| Sbjct 175452 TTGGCCTTCACATTCTCAATGGTGTC 175427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108503691476231