Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq376 132 4e-25 seq5258 102 7e-16 seq1743 95.1 1e-13 seq806 95.1 1e-13 seq1044 93.3 3e-13 seq1868 91.5 1e-12 seq470 91.5 1e-12 SEQ15051 87.8 1e-11 seq186 87.8 1e-11 >seq376 Length=984990 Score = 132 bits (146), Expect = 4e-25 Identities = 117/146 (80%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | || || ||||| || || |||||||| || || || || || Sbjct 519980 GTTACCAATGCTGTGGTCACAGTGCCAGCTTACTTCAATGACTCTCAGCGACAGGCAACA 519921 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||||||| |||||||| ||||| |||||||||||||| |||||| Sbjct 519920 AAAGATGCTGGAACTATTGCTGGCCTTAATGTACTTCGAATTATCAATGAACCAACTGCT 519861 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| |||| ||||| | ||||| Sbjct 519860 GCTGCTATTGCTTATGGCTTAGATAA 519835 Score = 100 bits (110), Expect = 2e-15 Identities = 135/186 (73%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| || ||||| ||||| | || |||| || || ||| Sbjct 520711 GGCATTGATCTTGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCATGGAAAGGTGGAA 520652 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 |||||||||||||| || |||||| |||| ||||| |||||| |||| ||||| || Sbjct 520651 ATTATTGCCAATGACCAGGGTAACCGAACCACTCCGAGCTATGTTGCTTTTACGGACACA 520592 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACCAATACTA 550175 |||| | || |||| ||||| || ||| | || | || || || || ||||| || Sbjct 520591 GAACGTCTAATTGGGGATGCTGCGAAAAACCAGGTTGCAATG--AACCCCACCAACACAG 520534 Query 550176 TTTTTG 550181 |||||| Sbjct 520533 TTTTTG 520528 >seq5258 Length=100039 Score = 102 bits (112), Expect = 7e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 ||||||||||||||| || || ||| ||||| |||| | ||| | |||||| Sbjct 782 ACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCC 841 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 || || ||||| ||||| || ||||| ||||||||||||||||||||||| ||||| || Sbjct 842 AGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 901 Query 563386 ATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTA 563445 || || ||||| || || || || | | | | ||||| || || || || Sbjct 902 ATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGACGGTCTTT 961 Query 563446 CCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || || || || || || ||||| Sbjct 962 CCCGTCAGGGTCTTCACAAAGATCTGCAT 990 >seq1743 Length=339712 Score = 95.1 bits (104), Expect = 1e-13 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 ||||||||||||||| || || ||| ||||| |||| | ||| |||||| Sbjct 2351 ACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCTTCT 2292 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 || || ||||| ||||| || ||||| ||||||||||||||||||||||| ||||| || Sbjct 2291 AGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 2232 Query 563386 ATTTT 563390 || || Sbjct 2231 ATCTT 2227 >seq806 Length=630265 Score = 95.1 bits (104), Expect = 1e-13 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 |||||||||||||| || || ||| ||||| |||| | ||| | |||||| Sbjct 94764 ACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCC 94823 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 || || ||||| ||||| || ||||| ||||||||||||||||||||||| ||||| || Sbjct 94824 AGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 94883 Query 563386 ATTTT 563390 || || Sbjct 94884 ATCTT 94888 >seq1044 Length=525964 Score = 93.3 bits (102), Expect = 3e-13 Identities = 153/214 (71%), Gaps = 10/214 (5%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 |||||||||||||| ||| |||| ||| ||||| |||| | ||| | ||||| Sbjct 400032 ACAAGATGAAGGGTGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTACGGCCATCTT 399975 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | || || || || ||||| || ||||| ||||||||||||||||| ||||| |||| | Sbjct 399974 CCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATCCCTTCCTTATTCT 399915 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTAT--CAGTG-TGAGTACATTCGAGAGTAACAG 563440 | || || ||||| || ||||| | ||| | | || | || ||| || | | Sbjct 399914 GGATCTTGGCCTTTACATTTTCTATTGTGTCCCAGGGTTCAG--CCTT-GAGTGTGATGG 399858 Query 563441 TTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || ||||| ||||| || ||||| ||||| Sbjct 399857 TCTTCCCTGTAAGGGTTTTCACAAAAATCTGCAT 399824 >seq1868 Length=317776 Score = 91.5 bits (100), Expect = 1e-12 Identities = 151/214 (71%), Gaps = 7/214 (3%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 ||||||||| || | ||| || ||| ||||| |||| | ||| | |||||| Sbjct 104819 ACAAGATGAGGGATGGATTCGTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCC 104878 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 || || || || ||||| || ||||| |||||||||||||||||||||| ||||| || Sbjct 104879 AGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTACTTATCCTGG 104938 Query 563386 AT-TTTTTG--TTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAG 563440 || || ||| ||||| || || || || || | || || ||||| || | | Sbjct 104939 ATCTTGTTGGCCTTTACATTTTCTATAGTCTC--TGAGGGTTCAACCTCGAGCGTGATGG 104996 Query 563441 TTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || ||||| || || || ||||| ||||| Sbjct 104997 TCTTCCCCGTAAGGGTCTTCACAAAAATATGCAT 105030 >seq470 Length=855345 Score = 91.5 bits (100), Expect = 1e-12 Identities = 95/123 (77%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 |||||||||||||| ||| ||||| ||| ||||| |||| | ||| | ||||| Sbjct 695612 ACAAGATGAAGGGTGGACTCCCTTTG--AATGTTGTAGTCAGACAAAGTACGACCATCTT 695669 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | || || || || | ||| || || || ||||||||||||||||||||||| ||||| | Sbjct 695670 CCAGCTGCTTACCAGGAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCT 695729 Query 563384 GAA 563386 ||| Sbjct 695730 GAA 695732 >SEQ15051 Length=11622 Score = 87.8 bits (96), Expect = 1e-11 Identities = 95/123 (77%), Gaps = 5/123 (4%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 |||||||||||||| |||| ||||| ||| ||||| |||| | ||| | || || Sbjct 5690 ACAAGATGAAGGGTGGACTTCCTTTG--AATGTTGTAGTCAGACAAAGTACGGCGATATT 5633 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTAT-CT 563382 | || || || || ||||||| || | ||||||||||||||||||||||| |||| || Sbjct 5632 CCAGCTGCTTACCAGCAAAAAACAGCCCCTGCTGATCAGGAGGAATTCCTTCCTTATCCT 5573 Query 563383 TGA 563385 ||| Sbjct 5572 TGA 5570 >seq186 Length=1368741 Score = 87.8 bits (96), Expect = 1e-11 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 ||||||||||||| || || ||| ||||| |||| | ||| | |||||| Sbjct 837435 ACAAGATGAAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCC 837376 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 || || ||| | ||| | || ||||| ||||||||||||||||||||||| ||||| || Sbjct 837375 AGCTGCTTTTCAGCAGAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 837316 Query 563386 ATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGTAACAGTTTT 563444 || || ||||| || || || || | | || | | ||||| || | || || Sbjct 837315 ATCTTGGCCTTTACATTTTCTATAGTGTCCGAG-GATTCAGCCTCGAGCGTGATGGTCTT 837257 Query 563445 ACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || ||||| || || || ||||| ||||| Sbjct 837256 CCCCGTAAGGGTCTTCACAAAAATCTGCAT 837227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4025657915903570