Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq3821 120 2e-22 seq24 98.7 8e-16 seq119 91.5 1e-13 >seq3821 Length=151595 Score = 120 bits (132), Expect = 2e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 29875 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 29934 |||| ||| || |||||||| ||||| || | ||||||||||| || ||||| || || Sbjct 45560 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATATTGAAGGGCACGCCT 45501 Query 29935 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAA 29994 || ||||| || || ||||||||||| ||||| || || |||||||| | ||| || Sbjct 45500 AGACCCATATCACCTGACCTCTGGTAAAGCTGGCAAGACAGCTCTCCATTCACCACATAG 45441 Query 29995 AACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGG 30033 |||||||| | || || || ||||| || ||||| ||| Sbjct 45440 AACTGACAGAGGGCATGACAGGGAGGCAGTGCCATCAGG 45402 Score = 105 bits (116), Expect = 5e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| |||||||| ||||||||||||||||| || || || || |||||||| Sbjct 43994 CATATCTTTGTAGTCTGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGGCCCAGGTC 43935 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || || | | | ||| ||| |||||| |||||||| ||| || ||||| || Sbjct 43934 CCCTTCCTGTCGGGCAGAGAATCCCAGGCTGTCCAGAAAGTCTCGGGACCCATTGGCATC 43875 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||| | || ||||| ||| || ||||| | |||||||| || Sbjct 43874 CCAGATTCTCACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGGATCC 43827 >seq24 Length=2736093 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/214 (71%), Gaps = 11/214 (5%) Strand=Plus/Plus Query 29888 TCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCC 29947 ||||||| ||||| || | |||||||| ||||||||||| || || || ||| Sbjct 845270 TCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTAAAGGGCACACC-AGACCCT------ 845322 Query 29948 CCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGG 30007 ||||||||||| ||||| || || | |||||| | ||| || |||| ||| | | Sbjct 845323 --GACCTCTGGTAAAGCTG-CAAGACACCTCTCCATTCACCACATAGAACTCACAGAGAG 845379 Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067 ||||| |||| || ||||| ||| | ||||| ||||||||||| ||| ||||| Sbjct 845380 CATGGCAATGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACGTGATGA 845439 Query 30068 TGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTC 30101 | | ||||| || | ||| | ||||| |||| Sbjct 845440 TTCTTCTGTCATCAAGATTGGTTTTGATG-GGTC 845472 >seq119 Length=1622055 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 229347 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 229288 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| || ||||||||||||||||||| ||||| || ||| Sbjct 229287 ATGGAGAACCAGGTTTTTCTACCCATTATCACCAGATTCTGTTTACCT 229240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408275009002589