Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq806 91.5 1e-13 seq1743 86.0 5e-12 seq186 86.0 5e-12 >seq806 Length=630265 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || ||| ||| || ||||| ||||| ||||| | | | || | || Sbjct 94760 CAACACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGGCCATC 94819 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| |||||| || ||||| ||||||| ||| ||||| | |||| || ||||| || Sbjct 94820 TTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 94879 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| || ||| | | || ||||| | || ||| | | | || || Sbjct 94880 CTGGATCTTGGCCTTAACATTTTCTATAGTGTCTGAGGGTTCAGCCTTGAGCATGATGGT 94939 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGT 48771 || ||||| | || || ||||||||||||||| ||| Sbjct 94940 CTTCCCCGTAAGGGTCTTCACAAAAATCTGCATCTTGT 94977 >seq1743 Length=339712 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || || ||| |||||||| ||||| ||||| | | | | | || Sbjct 2355 CAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATC 2296 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || | |||||| || ||||| ||||||| ||| ||||| | |||| || ||||| || Sbjct 2295 TTCTAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 2236 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||| | | | || || || | || ||||| | ||| || || Sbjct 2235 CTGGATCTTGGCCTTTATATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 2176 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || | |||| || || ||||||||||||||| || Sbjct 2175 CTTCCTGGTCAGGGTCTTCACAAAAATCTGCATCTTG 2139 >seq186 Length=1368741 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || | | ||| || ||||| ||||| ||||| | | | || | || Sbjct 837439 CAACACAAGATGAAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGGCCATC 837380 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| |||||| | ||| | ||||||| ||| ||||| | |||| || ||||| || Sbjct 837379 TTCCAGCTGCTTTTCAGCAGAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 837320 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | | || || || | || |||| | ||| || || Sbjct 837319 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAGCCTCGAGCGTGATGGT 837260 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || ||||| | || || ||||||||||||||| || Sbjct 837259 CTTCCCCGTAAGGGTCTTCACAAAAATCTGCATCTTG 837223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380618216321139