Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq86 181 2e-40 seq211 141 2e-28 seq6788 104 4e-17 seq1277 89.7 1e-12 >seq86 Length=1822319 Score = 181 bits (200), Expect = 2e-40 Identities = 186/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||| ||||| |||||||| || Sbjct 132303 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGCTTGAGCTGGGCCACTTGC 132244 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 || ||||| ||| || ||| | ||||| || || || |||| ||||||| |||||| Sbjct 132243 TCGCGCAGGACGCCGGCCGTACTCGACAGCCCCGCATTCTCAGCCTTGAGCGTCTTCACC 132184 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 132183 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 132124 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 | |||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| || Sbjct 132123 CTGTTCCGCAGCCGCTTTCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 132064 Query 241625 GAC 241627 ||| Sbjct 132063 GAC 132061 >seq211 Length=1288492 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||||||||| || |||||||| || ||||| | | ||||| | ||| Sbjct 891808 AGGACTTTCTGTTTGAGCTGCGCCACCTGCTCGCGCAGGAGGCTGGCGGTGGACGCCAGC 891749 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||| ||| |||||||||||||| |||| ||| || ||||| Sbjct 891748 TCGGTGTTCTGGCTTTTGAGGGTCTTGACTTTCTCCTCCAGGCGCGAGATCCGCTCCAGC 891689 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| || || | |||||| || || ||||| || ||||||||| Sbjct 891688 TTGCGCTTGCGGCACTTGGAAGCGGCGATGCGGTTGCGCAGCCTCTTGCGCTCCGCCTTG 891629 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||||||||| ||||||||||| || ||| Sbjct 891628 ATGCGTTCCTGCGTGTCCATGTCGATGGGCGAC 891596 >seq6788 Length=68851 Score = 104 bits (114), Expect = 4e-17 Identities = 99/124 (80%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| ||||| ||||||||||||||||| |||||| ||||||||||| ||| Sbjct 50175 GTGTACTCCACTATCTCCGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGG 50234 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| |||||||||||||| |||| || |||||| ||| Sbjct 50235 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTGCCCGTCTCTGTCTG 50293 Query 213647 GGAC 213650 ||| Sbjct 50294 AGAC 50297 >seq1277 Length=441309 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 17225 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 17284 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | || |||||||| || |||||| |||||||||| Sbjct 17285 GCGATGCGGTTCCTCATGCGCTTCCTCTCTGCCTTGATCCGCTCCTGGGACTCCATGTCG 17344 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 17345 ATGGGGGAC 17353 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 424085 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 424026 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | || |||||||| || |||||| |||||||||| Sbjct 424025 GCGATGCGGTTCCTCATGCGCTTCCTCTCTGCCTTGATCCGCTCCTGGGACTCCATGTCG 423966 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 423965 ATGGGGGAC 423957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930731763301120