Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq376 113 3e-19 seq5258 96.9 2e-14 seq1743 96.9 2e-14 seq806 96.9 2e-14 SEQ11613 91.5 1e-12 seq2164 87.8 1e-11 seq1868 87.8 1e-11 seq1062 87.8 1e-11 seq186 87.8 1e-11 >seq376 Length=984990 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || || ||||| || || ||||| ||||| || || ||||| ||||||| Sbjct 519973 ATGCTGTGGTCACAGTGCCAGCTTACTTCAATGACTCTCAGCGACAGGCAACAAAAGATG 519914 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| ||||| || |||||||| | || ||||| ||||||||||| || || || Sbjct 519913 CTGGAACTATTGCTGGCCTTAATGTACTTCGAATTATCAATGAACCAACTGCTGCTGCTA 519854 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||| | |||||||| Sbjct 519853 TTGCTTATGGCTTAGATAAGAA 519832 Score = 111 bits (122), Expect = 1e-18 Identities = 232/341 (68%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 475484 AGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACT 475543 || ||||| | ||||| |||||||| |||||||| | || || || || || | Sbjct 519524 AGGCGTCTCCGTACTGCCTGTGAACGGGCTAAGCGCACCCTCTCCTCCAGCACCCAGGCC 519465 Query 475544 ACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCT 475603 | | |||| |||||||||| | ||| |||||||| | |||| |||||| | ||| Sbjct 519464 AGTATTGAGATTGATTCTCTCTATGAGGGAATTGACTTCTATACCTCTATTACCCGTGCT 519405 Query 475604 AAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTT 475663 |||||| || | | |||| || || | ||| | || || || ||| | | Sbjct 519404 CGATTTGAGGAATTGAATGCTGACCTGTTCCGTGGCACACTGGATCCTGTAGAAAAGGCC 519345 Query 475664 CTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCA 475723 || | ||| | ||||||||||| ||||| | ||||| |||||||| || || ||||| Sbjct 519344 CTTCGCGATGCCAAACTTGACAAGTCACAGATTCATGACATTGTTCTGGTTGGTGGTTCT 519285 Query 475724 ACAAGAATTCCAAAAATAAGAGAAATGCT--TTCATCA-TATTTTAATGGTAAAAAGTTA 475780 || ||||| || || || |||| ||| | || | | || || || ||| | | Sbjct 519284 ACTAGAATCCCCAAGAT-TCAGAA--GCTTCTGCAAGACTTCTTCAACGGGAAAGAACTG 519228 Query 475781 AATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821 || | || | || ||||||||||||||||| ||||| || Sbjct 519227 AACAAGAGCATTAACCCTGATGAAGCTGTTGCTTATGGTGC 519187 Score = 111 bits (122), Expect = 1e-18 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| |||| |||||| | || || || ||| ||||| | ||| | || |||| || Sbjct 520718 TGCAGTTGGCATTGATCTTGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCATGGAAA 520659 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || ||||| |||||||||||||| ||||| |||| || || |||||| ||||||| Sbjct 520658 GGTGGAAATTATTGCCAATGACCAGGGTAACCGAACCACTCCGAGCTATGTTGCTTTTAC 520599 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCA 474493 || || |||| ||| ||||| |||||||| ||| | || | |||| Sbjct 520598 GGACACAGAACGTCTAATTGGGGATGCTGCGAAAAACCAGGTTGCA 520553 Score = 95.1 bits (104), Expect = 8e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 |||||||||||| | || || ||||| ||| ||||||| ||| | || ||| Sbjct 518561 TGAAGGTGAAAGGGCCATGACCAAGGATAACAACCTGCTTGGAAAGTTTGAACTCACAGG 518502 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 || ||||| || || | || || ||||| |||||||| |||||||| |||||||| || Sbjct 518501 CATACCTCCAGCACCTCGTGGTGTCCCTCAGATTGAAGTCACTTTTGACATTGATGCCAA 518442 Query 476152 TGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||| || || |||||| ||||| ||||| Sbjct 518441 TGGCATCCTCAATGTTTCTGCTGTAGATAA 518412 >seq5258 Length=100039 Score = 96.9 bits (106), Expect = 2e-14 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 480564 ACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCA 480623 ||||||||||| ||| || || || || || |||| | ||| | | |||||| Sbjct 782 ACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCC 841 Query 480624 AGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGA 480683 || |||||||||||||| || || | || ||||||||||||||||||||||| || || Sbjct 842 AGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 901 Query 480684 ATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTA 480743 ||||| || ||| ||| ||||| || | | || | || || || | || || Sbjct 902 ATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGACGGTCTTT 961 Query 480744 CCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| || || || || Sbjct 962 CCCGTCAGGGTCTTCACAAAGATCTG 987 >seq1743 Length=339712 Score = 96.9 bits (106), Expect = 2e-14 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 480564 ACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCA 480623 ||||||||||| ||| || || || || || |||| | ||| | |||||| Sbjct 2351 ACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCTTCT 2292 Query 480624 AGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGA 480683 || |||||||||||||| || || | || ||||||||||||||||||||||| || || Sbjct 2291 AGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 2232 Query 480684 ATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTA 480743 ||||| || | | ||| ||||| || | | || | || || || || || || Sbjct 2231 ATCTTGGCCTTTATATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTC 2172 Query 480744 CCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||| || ||||| || ||||| || Sbjct 2171 CTGGTCAGGGTCTTCACAAAAATCTG 2146 >seq806 Length=630265 Score = 96.9 bits (106), Expect = 2e-14 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 480564 ACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCA 480623 ||||||||||| || || || || || || |||| | ||| | | |||||| Sbjct 94764 ACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCC 94823 Query 480624 AGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGA 480683 || |||||||||||||| || || | || ||||||||||||||||||||||| || || Sbjct 94824 AGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 94883 Query 480684 ATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTA 480743 ||||| || ||| ||| ||||| || | | || || | || | || || || Sbjct 94884 ATCTTGGCCTTAACATTTTCTATAGTGTCTGAGGGTTCAGCCTTGAGCATGATGGTCTTC 94943 Query 480744 CCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| || ||||| || Sbjct 94944 CCCGTAAGGGTCTTCACAAAAATCTG 94969 >SEQ11613 Length=25137 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || |||||||||||||| || || | || ||||||||||||||||||||||| Sbjct 17224 ATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTT 17283 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 || || ||||| || ||| ||| ||||| || | | || | || || || || Sbjct 17284 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGAGTGAT 17343 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| || || || || Sbjct 17344 GGTCTTCCCCGTCAGGGTCTTCACAAAGATCTG 17376 >seq2164 Length=276870 Score = 87.8 bits (96), Expect = 1e-11 Identities = 121/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| |||| |||||| || || || ||| ||||| | ||| | || |||| || Sbjct 34526 TGCAGTTGGCATTGATCGTGGCACCACCTACTCCTGTGTGGGTGTCTTTCATCATGGAAA 34585 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACAC-CATCATATGTTTCTTTTA 474446 | |||||||| ||||||||||| ||||| ||| || | | || ||||| |||||| Sbjct 34586 GATGGAAATAATCGCCAATGACCAGGGTAACCAAACCACTCTGAGCA-ATGTTGCTTTTA 34644 Query 474447 CTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCA 474493 ||| || ||||| || | ||| ||||||| ||| |||| | |||| Sbjct 34645 CTGGCACAGAACAACTAACTGGGGATGCTGTGAAAAATCAGGTTGCA 34691 >seq1868 Length=317776 Score = 87.8 bits (96), Expect = 1e-11 Identities = 128/179 (72%), Gaps = 3/179 (2%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| | ||| | | |||||| || ||||| |||||||| || || | || Sbjct 104849 TTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGC 104908 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT-TTG--TTTGACAGCTTCAATAGTA 480710 ||||||||||||||||||| ||| || || ||||| ||| || ||| ||| ||||| Sbjct 104909 TGATCAGGAGGAATTCCTTACTTATCCTGGATCTTGTTGGCCTTTACATTTTCTATAGTC 104968 Query 480711 TCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | | || | || || || || || || || || || ||||| || ||||| || Sbjct 104969 TCTGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATATG 105027 >seq1062 Length=516367 Score = 87.8 bits (96), Expect = 1e-11 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || |||||||| || || ||||||||||||| ||||||||||| ||||| |||||||| Sbjct 141830 GGAATTCCTCCAGCCCCTCGAGGAGTTCCTCAGATTGAAGTTACATTTGACATTGATGCC 141889 Query 476150 AATGGTATTCTTAATGTTACTGC 476172 ||||| ||| | ||||| |||| Sbjct 141890 AATGGGATTGTGCATGTTTCTGC 141912 >seq186 Length=1368741 Score = 87.8 bits (96), Expect = 1e-11 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 480564 ACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCA 480623 ||||||||||| | || || || || || |||| | ||| | | |||||| Sbjct 837435 ACAAGATGAAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCC 837376 Query 480624 AGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGA 480683 || |||||| ||||| | || || | || ||||||||||||||||||||||| || || Sbjct 837375 AGCTGCTTTTCAGCAGAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 837316 Query 480684 ATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTA 480743 ||||| || ||| ||| ||||| || | | | || || || || || || || Sbjct 837315 ATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAGCCTCGAGCGTGATGGTCTTC 837256 Query 480744 CCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| || ||||| || Sbjct 837255 CCCGTAAGGGTCTTCACAAAAATCTG 837230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265228334446364