Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq951 360 2e-94 >seq951 Length=571742 Score = 360 bits (398), Expect = 2e-94 Identities = 677/988 (69%), Gaps = 17/988 (2%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||||||| |||| |||||| ||| ||||| |||||| || || || Sbjct 399758 CAGATGCTCATCCAGACACTGGATGGCGAAGGGGTCGACGTCCATGTCGAACTTGTTGGC 399817 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 || || ||||| || | || ||||| || ||| || | ||||| ||||| || Sbjct 399818 AAAAAGGTGGTGC---TTGCGCAGCATCCATCTCAAGTCCCCCGCTCCGAAGACGCACAC 399874 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | |||||| || ||||| || ||||| |||| ||| | | ||||| ||||| Sbjct 399875 GGAGCGCACGTGCACTCCATTGCACGGGGGGTAAGGAGCGCCTCTGGAAACGTCGCCTTC 399934 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 | ||||||||||||| |||||||| || || || | |||||| || ||| || || | Sbjct 399935 GAAGTACTGCCACTTGACAAACCTCGCGATGGCATTCATGTCAGACAAGTCATACTTATT 399994 Query 160292 CATC-AGGGGAACG-GCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGT 160349 | ||||| || | ||| || || | || || ||||| | |||||||| ||| Sbjct 399995 GCTGGAGGGG--CGAGAACCAGGGACTTCAGGGATCCGCTGGATAGTGGCCCAAAGGAAC 400052 Query 160350 TCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT--TAACCTGTCCC 160407 ||||| |||||||| ||||||| | |||||||||||||| | ||| | | | | | Sbjct 400053 TCGTCTGGGCTGTATGTGTCCTGCGCCCATTCCATGAACTTTTGGATATTTTCATTTTCT 400112 Query 160408 GCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCG 160467 || || || || || || | || |||||||| |||||||| || || | | Sbjct 400113 --AGCACATGGCCTACATATTCCCTACTGACCACAAAGTAGGCGCTGCCTGAAAAAAGAG 400170 Query 160468 G---TATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCA 160524 | | || || |||| ||| ||||| | || ||||||| || | || | | Sbjct 400171 GAGTTTTGAGTGGAGGCTGCG---CTTTGGCTACCCCAGTGTTAGTCAGCTTCCCATCAA 400227 Query 160525 CCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTA 160584 | | | ||| ||||| ||||| || | ||||| || ||||| || || || | Sbjct 400228 CAATGGTGTGCCGCTTTTTCCATCTTTCTTCCTTGTTGGGAGGCATCTTCTCAGTTTCCA 400287 Query 160585 GACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCG 160644 | |||| |||| || ||| || |||| | |||| || || ||||| || || | | Sbjct 400288 GGTTGTTTTCACCTATGAACGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAG 400347 Query 160645 GAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGT 160704 | || || |||| || | || |||| ||||||||| || || ||| || ||||| Sbjct 400348 GGAAATCCATACCACAGAGATTAATCAAGTACTTCCAGTTTGCATTCATTCTGTACAGGT 400407 Query 160705 CCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTA 160764 || ||||||| || | || ||||| || || |||||||| || || || || ||||| | Sbjct 400408 CCTTCATGCAGTTGAGGTCGGCCTGAACCCGACTCCAGGAGGCATAAACAACATTCTCCA 400467 Query 160765 GTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGA 160824 | |||||||||||||| |||||||| || ||| | || ||| |||| || || | Sbjct 400468 ACTGGCTGGCCACAAAGACATTATCGAAGCAGGACGCAATGCCCGCCACTGCGGCTAAAA 400527 Query 160825 ACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGG 160884 | | || || || |||||| || | ||| || | ||||| ||| |||||||| Sbjct 400528 AGGATTCCTCTGCTTTCTTGTCCACATGGATGCAGTAGAAATTCTGGGGCATGTAGATGG 400587 Query 160885 CCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCG 160944 |||| || | ||| || | ||| || |||||||| || | |||||| || || || || | Sbjct 400588 CCCTCAGGAGCCTGTCAAGCATTTCAATCTTATGGTGAACCACGATGGAATATGCAATTG 400647 Query 160945 GAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAAT 161004 |||| | | ||| || ||| |||| | | | || || || |||||||| ||| Sbjct 400648 GAAAGCCTGCCTCTTCTTTACTAAGGGGCTCCACAATATATTTGCGAGTCTTGATGAAAG 400707 Query 161005 AATCACAATCCCGCGTCATGTTGATATA 161032 | | || | |||||||||| ||||| Sbjct 400708 AGGCGCAGTTATGCGTCATGTTTATATA 400735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576722841994680