Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1743 113 8e-20 SEQ11613 107 3e-18 seq5258 107 3e-18 seq186 96.9 6e-15 seq806 89.7 9e-13 seq4084 87.8 3e-12 seq1868 87.8 3e-12 seq1044 86.0 1e-11 >seq1743 Length=339712 Score = 113 bits (124), Expect = 8e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || ||| || ||||| || || || ||| ||| Sbjct 2351 ACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCTTCT 2292 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || ||||| ||||| || | |||||| ||||||||||| |||||||| ||||| || Sbjct 2291 AGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 2232 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| ||||||||| ||||| || || | ||||| || || || || || || Sbjct 2231 ATCTTGGCCTTTATATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTC 2172 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | || || || || ||||| || ||||| || Sbjct 2171 CTGGTCAGGGTCTTCACAAAAATCTGCATCTT 2140 >SEQ11613 Length=25137 Score = 107 bits (118), Expect = 3e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||| ||||| || | |||||| ||||||||||| |||||||| ||||| || || Sbjct 17234 TGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATC 17293 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| |||| |||| ||||| || || | ||||| || ||||| || || || || Sbjct 17294 TTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGAGTGATGGTCTTCCCC 17353 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || ||||| || ||||| || Sbjct 17354 GTCAGGGTCTTCACAAAGATCTGCATCTT 17382 >seq5258 Length=100039 Score = 107 bits (118), Expect = 3e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || ||| || ||||| || || || | ||| || Sbjct 782 ACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCC 841 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || ||||| ||||| || | |||||| ||||||||||| |||||||| ||||| || Sbjct 842 AGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 901 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| ||||| || || | ||||| || || || | || || Sbjct 902 ATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGACGGTCTTT 961 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || ||||| || ||||| || Sbjct 962 CCCGTCAGGGTCTTCACAAAGATCTGCATCTT 993 >seq186 Length=1368741 Score = 96.9 bits (106), Expect = 6e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| || ||||| || || || | ||| || | || ||| | ||| | || | ||| Sbjct 837409 AATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTTTCAGCAGAGATCAGTCT 837350 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| ||||||||||| |||||||| ||||| || || |||| |||| |||| ||||| Sbjct 837349 CTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGT 837290 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 || || || ||| | || || || || || || || || || || || ||||| || || Sbjct 837289 GTCCGAGGATTCAGCCTCGAGCGTGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATCTG 837230 Query 193358 CATTTT 193363 ||| || Sbjct 837229 CATCTT 837224 >seq806 Length=630265 Score = 89.7 bits (98), Expect = 9e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | || | ||| || ||| || ||||| || || || | ||| || Sbjct 94764 ACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCC 94823 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || ||||| ||||| || | |||||| ||||||||||| |||||||| ||||| || Sbjct 94824 AGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 94883 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| || | |||| ||||| || || | ||| | | || | || || || Sbjct 94884 ATCTTGGCCTTAACATTTTCTATAGTGTCTGAGGGTTCAGCCTTGAGCATGATGGTCTTC 94943 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || ||||| || ||||| || Sbjct 94944 CCCGTAAGGGTCTTCACAAAAATCTGCATCTT 94975 >seq4084 Length=139134 Score = 87.8 bits (96), Expect = 3e-12 Identities = 134/191 (70%), Gaps = 5/191 (3%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| || ||||| || || || | ||| || | || ||||| ||| | || | ||| Sbjct 21931 AATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAGAGATCAGTCT 21990 Query 193238 CTGTTGATCAGGAGGTATTCCTTCT-----TTATCTTGTATTTTGGTTTTTATATTTAAA 193292 ||| ||||||||||| ||||||||| ||||| || || |||| |||| |||| Sbjct 21991 CTGCTGATCAGGAGGCATTCCTTCTGGATCTTATCCTGGATCTTGGCCTTTACATTTTCT 22050 Query 193293 ATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAAT 193352 ||||| || || | ||||| || || || || || || || | || || || ||||| Sbjct 22051 ATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCTTAAGGGTCTTCACAAAA 22110 Query 193353 ATTTGCATTTT 193363 || ||||| || Sbjct 22111 ATCTGCATCTT 22121 >seq1868 Length=317776 Score = 87.8 bits (96), Expect = 3e-12 Identities = 133/189 (70%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| || ||||| || || || | ||| || | || || || ||||| || | ||| Sbjct 104845 AATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCT 104904 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTA---TTTTGGTTTTTATATTTAAAAT 193294 ||| ||||||||||| ||||||| ||||| || | | |||| |||| |||| || Sbjct 104905 CTGCTGATCAGGAGGAATTCCTTACTTATCCTGGATCTTGTTGGCCTTTACATTTTCTAT 104964 Query 193295 AGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATAT 193354 ||| || || | ||||| || || || || || || || || || || || ||||| || Sbjct 104965 AGTCTCTGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGTAAGGGTCTTCACAAAAAT 105024 Query 193355 TTGCATTTT 193363 ||||| || Sbjct 105025 ATGCATCTT 105033 >seq1044 Length=525964 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | || | ||| || ||| || ||||| || || || | ||| || Sbjct 400032 ACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCC 399973 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || || || ||||| || | |||||| ||||||||||| || ||||| |||| || Sbjct 399972 AGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATCCCTTCCTTATTCTGG 399913 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| || || || | | ||| | | || || || || || Sbjct 399912 ATCTTGGCCTTTACATTTTCTATTGTGTCCCAGGGTTCAGCCTTGAGTGTGATGGTCTTC 399853 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || ||||| ||||| || ||||| || Sbjct 399852 CCTGTAAGGGTTTTCACAAAAATCTGCATCTT 399821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898880775935760