Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value SEQ11613 111 3e-19 seq5258 109 1e-18 seq1868 104 5e-17 seq1743 96.9 7e-15 seq806 95.1 2e-14 seq1044 87.8 4e-12 >SEQ11613 Length=25137 Score = 111 bits (122), Expect = 3e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 192361 TAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGA 192420 || ||||| || || || |||| |||| || || ||||||||||| | |||||| ||| Sbjct 17204 TAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGA 17263 Query 192421 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGAC 192480 ||||| || |||||||| ||||| || || || |||||||| ||||| || || Sbjct 17264 TCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAG 17323 Query 192481 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | ||| || || ||||| ||||| || || || | || || | ||| |||||||| || Sbjct 17324 GGTTCAACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAGATCTGCATCTT 17382 >seq5258 Length=100039 Score = 109 bits (120), Expect = 1e-18 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | || | || || | ||| | |||| ||| ||| || || || || |||| Sbjct 763 ACCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGA-ATGTTGTAGTCAG 821 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || || |||| |||| || || ||||||||||| | |||||| |||||||| | Sbjct 822 ACAAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAG 881 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||||| || || | ||| | Sbjct 882 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAA 941 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || | ||| || || || | || || | ||| |||||||| || Sbjct 942 CCTCGAGCGTGACGGTCTTTCCCGTCAGGGTCTTCACAAAGATCTGCATCTT 993 >seq1868 Length=317776 Score = 104 bits (114), Expect = 5e-17 Identities = 136/188 (72%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || || ||||| || || || |||| |||| || || ||||||||||| | |||| Sbjct 104846 ATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTC 104905 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT---TTTTACATTAGTTATA 192471 || |||||||| || ||||||| ||||| || || || || |||||||| |||| Sbjct 104906 TGCTGATCAGGAGGAATTCCTTACTTATCCTGGATCTTGTTGGCCTTTACATTTTCTATA 104965 Query 192472 GAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATC 192531 | ||||| | ||| || || || || ||||| || || || | || || | ||| || Sbjct 104966 GTCTCTGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATA 105025 Query 192532 TGCATTTT 192539 ||||| || Sbjct 105026 TGCATCTT 105033 >seq1743 Length=339712 Score = 96.9 bits (106), Expect = 7e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | || | || || | ||| | |||| ||| ||| || || || || |||| Sbjct 2370 ACCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGA-ATGTTGTAGTCAG 2312 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || | |||| || | || || ||||||||||| | |||||| |||||||| | Sbjct 2311 ACAAAGTATGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAG 2252 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||| ||| ||||| || || | ||| | Sbjct 2251 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTATATTTTCTATAGTGTCCGAGGGTTCAA 2192 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||| || | || | || || | ||| |||||||| || Sbjct 2191 CCTCGAGCGTGATGGTCTTCCTGGTCAGGGTCTTCACAAAAATCTGCATCTT 2140 >seq806 Length=630265 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || || ||||| || || || |||| |||| || || ||||||||||| | |||| Sbjct 94791 ATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTC 94850 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || |||||||| || |||||||| ||||| || || || || ||||| ||||| Sbjct 94851 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTAACATTTTCTATAGTG 94910 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 ||||| | ||| | | || | ||||| || || || | || || | ||| |||||| Sbjct 94911 TCTGAGGGTTCAGCCTTGAGCATGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGC 94970 Query 192535 ATTTT 192539 || || Sbjct 94971 ATCTT 94975 >seq1044 Length=525964 Score = 87.8 bits (96), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || || ||||| || || || |||| |||| || || |||||||||| Sbjct 400012 CTTTTGA-ATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTCCCAGCAAAGA 399954 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | |||||| |||||||| || || ||||| |||| || || || |||||||| Sbjct 399953 TCAGTCTCTGCTGATCAGGAGGAATCCCTTCCTTATTCTGGATCTTGGCCTTTACATTTT 399894 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||| | || | | ||| | | || || ||||| || || || | ||||| | || Sbjct 399893 CTATTGTGTCCCAGGGTTCAGCCTTGAGTGTGATGGTCTTCCCTGTAAGGGTTTTCACAA 399834 Query 192527 ATATCTGCATTTT 192539 | |||||||| || Sbjct 399833 AAATCTGCATCTT 399821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983612269175550