Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq385 179 5e-39 seq818 161 1e-33 SEQ68729 150 2e-30 seq1391 116 5e-20 seq463 116 5e-20 SEQ16897 107 2e-17 seq1289 98.7 1e-14 >seq385 Length=970056 Score = 179 bits (198), Expect = 5e-39 Identities = 162/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||| | |||||| | || Sbjct 344799 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGCACCTCGCGGGACGTGA 344740 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| ||||||| || ||||||| |||| | Sbjct 344739 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAGA 344680 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 344679 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 344620 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 |||||||||| ||||||||||||| Sbjct 344619 GCACCTGCTTCAGCACCTTGTAGA 344596 Score = 179 bits (198), Expect = 5e-39 Identities = 162/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||| | |||||| | || Sbjct 348970 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGCACCTCGCGGGACGTGA 349029 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| ||||||| || ||||||| |||| | Sbjct 349030 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAGA 349089 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 349090 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 349149 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 |||||||||| ||||||||||||| Sbjct 349150 GCACCTGCTTCAGCACCTTGTAGA 349173 Score = 129 bits (142), Expect = 7e-24 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 1254421 AGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1254480 |||||||||| ||| ||||||| || ||||||| |||| ||||||||||| ||||||| Sbjct 344521 AGTGCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGT 344462 Query 1254481 TCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1254540 |||||| ||| | |||| ||||||||| ||| |||||||||||||| ||||||| Sbjct 344461 TCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGTGCACCTGCTTCAGCACCT 344402 Query 1254541 TGTAGA 1254546 |||||| Sbjct 344401 TGTAGA 344396 Score = 129 bits (142), Expect = 7e-24 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 1254421 AGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1254480 |||||||||| ||| ||||||| || ||||||| |||| ||||||||||| ||||||| Sbjct 349623 AGTGCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGT 349682 Query 1254481 TCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1254540 |||||| ||| | |||| ||||||||| ||| |||||||||||||| ||||||| Sbjct 349683 TCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGTGCACCTGCTTCAGCACCT 349742 Query 1254541 TGTAGA 1254546 |||||| Sbjct 349743 TGTAGA 349748 >seq818 Length=626890 Score = 161 bits (178), Expect = 1e-33 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 43487 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 43546 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| ||||||||| || |||||| ||||||| |||| | Sbjct 43547 TGGTCGAGCGCTTGTTGTAGTGCGCCAAGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 43606 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 43607 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 43666 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||||||||| ||||||||||| | | || |||||| Sbjct 43667 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 43703 >SEQ68729 Length=1002 Score = 150 bits (166), Expect = 2e-30 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| |||| || Sbjct 928 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 869 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| ||||||| |||| | Sbjct 868 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 809 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| | || || |||||||||| ||| | ||| ||||||||| ||| |||| Sbjct 808 TGTCGGTCACGAAGGAGTTCATGATGCTCATGGCCTTAGAGGAGATGCCGGTGTCCGGGT 749 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||| ||||||||||||||| Sbjct 748 GCACCTGCTTCAGCACCTTGTAGATG 723 >seq1391 Length=410803 Score = 116 bits (128), Expect = 5e-20 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| |||| || Sbjct 307280 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 307339 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| ||||||| |||| | Sbjct 307340 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 307399 Query 1254463 TGTCGTTGACAAACGAGTTCATGA 1254486 |||||||||| ||||||||||||| Sbjct 307400 TGTCGTTGACGAACGAGTTCATGA 307423 >seq463 Length=870752 Score = 116 bits (128), Expect = 5e-20 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| |||| || Sbjct 204581 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 204640 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| ||||||| |||| | Sbjct 204641 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 204700 Query 1254463 TGTCGTTGACAAACGAGTTCATGA 1254486 |||||||||| ||||||||||||| Sbjct 204701 TGTCGTTGACGAACGAGTTCATGA 204724 Score = 116 bits (128), Expect = 5e-20 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| |||| || Sbjct 283553 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 283494 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| ||||||| |||| | Sbjct 283493 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 283434 Query 1254463 TGTCGTTGACAAACGAGTTCATGA 1254486 |||||||||| ||||||||||||| Sbjct 283433 TGTCGTTGACGAACGAGTTCATGA 283410 Score = 104 bits (114), Expect = 3e-16 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 1254448 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGA 1254507 ||||||| |||| ||||||||||| |||||||||||| ||| | |||| |||| Sbjct 240528 CGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCATGCTGCCCATGGCCTTGGACGAGA 240587 Query 1254508 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 ||||| |||||||||||||||||| ||||||||||| | | || |||||| Sbjct 240588 TGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 240639 >SEQ16897 Length=9104 Score = 107 bits (118), Expect = 2e-17 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 1254448 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGA 1254507 ||||||| |||| ||||||||||| ||||||||||||| ||| | |||| |||| Sbjct 7965 CGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGA 8024 Query 1254508 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 ||||| |||||||||||||||||| ||||||||||| | | || |||||| Sbjct 8025 TGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 8076 >seq1289 Length=437052 Score = 98.7 bits (108), Expect = 1e-14 Identities = 145/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| |||||| | | ||| | || |||||| || ||||||| || |||| || Sbjct 3186 GCTTGGTCAGTTCTCTGGGCAGCAGCAAGCGCACCGCCATCTGGATATCCCGCGAAGTGA 3245 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||| || ||||||| | |||||| ||||||| || | | Sbjct 3246 TAGTAGAATGCTTGTTGTAGGGCGCCAGGCATGACGCCTCGCCCACGATGCGCTCCAAAA 3305 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGA-CTTGTTGGAGATGCCCACGTCGGGG 1254521 ||||||||||||| |||||||||| | | || |||| |||||||| ||||||| Sbjct 3306 TGTCGTTGACAAAGGAGTTCATGA-TGCCTGTGAGCTTGGACGAGATGCCTGTGTCGGGG 3364 Query 1254522 TGCACCTGCTTGAGCACCTTGTA 1254544 ||||||||| | ||||| ||||| Sbjct 3365 TGCACCTGCCTCAGCACTTTGTA 3387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6101493724262381