Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq5258 136 4e-27 seq1743 127 2e-24 seq1044 123 2e-23 seq1868 116 3e-21 SEQ11613 113 4e-20 seq584 96.9 3e-15 seq470 95.1 1e-14 seq245 89.7 5e-13 seq5515 87.8 2e-12 >seq5258 Length=100039 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || | |||||||| || ||| || | Sbjct 991 GATGCAGATCTTTGTGAAGACCCTGACGGGAAAGACCGTCACGCTCGAGGTTGAACCCTC 932 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||||| ||||| |||||||| || || |||||||| ||||| ||||| Sbjct 931 GGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 872 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || || |||||||| ||| | | |||| || || || Sbjct 871 GCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAA 812 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||| || || || || | |||||| || | || || || Sbjct 811 CATTCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACTCCGTGGTGG 764 >seq1743 Length=339712 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || || ||| | || || || |||||||| || ||| || | Sbjct 2142 GATGCAGATTTTTGTGAAGACCCTGACCAGGAAGACCATCACGCTCGAGGTTGAACCCTC 2201 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||||| |||| |||||||| || || |||||||| ||||| ||||| Sbjct 2202 GGACACTATAGAAAATATAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 2261 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT-GTCAGATTATA 24881 || | |||||||||| || || ||||| || ||| | | || | ||| || || | Sbjct 2262 GCAGAGACTGATCTTTGCTGGAAAGCAGCTAGAAGATG-GCCATACTTTGTCTGACTACA 2320 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||||| || || || || | |||||| || | || || || Sbjct 2321 ACATTCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACTCCGTGGTGG 2369 >seq1044 Length=525964 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | ||||| || || || || || || || ||| | | ||| || Sbjct 399823 GATGCAGATTTTTGTGAAAACCCTTACAGGGAAGACCATCACACTCAAGGCTGAACCCTG 399882 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| |||||| ||||| |||||||| | || ||||| || ||||| ||||| Sbjct 399883 GGACACAATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAGGGATTCCTCCTGATCA 399942 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| ||||| |||||||| ||| | | |||| || || || Sbjct 399943 GCAGAGACTGATCTTTGCTGGGAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAA 400002 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||| || || || || | |||||| || | || || || Sbjct 400003 CATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTCCGTGGTGG 400050 >seq1868 Length=317776 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || ||| | || || || || || || || || |||||||| || ||| || | Sbjct 105031 GATGCATATTTTTGTGAAGACCCTTACGGGGAAGACCATCACGCTCGAGGTTGAACCCTC 104972 Query 24763 CGACACAGTAGAAACGGTAAAA--CAA-AAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819 || || |||||| ||||| ||| |||||||| || || ||||||| ||||| || Sbjct 104971 AGAGACTATAGAAAATGTAAAGGCCAACAAGATCCAGGATAAGTAAGGAATTCCTCCTGA 104912 Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTA 24879 ||| || | |||||||||| ||||| |||||||| ||| | | |||| || || Sbjct 104911 TCAGCAGAGACTGATCTTTGCTGGGAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTA 104852 Query 24880 TAACATTCAAAAGGAATC 24897 ||||||||||| ||||| Sbjct 104851 CAACATTCAAAACGAATC 104834 >SEQ11613 Length=25137 Score = 113 bits (124), Expect = 4e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || ||||| || ||| || | Sbjct 17380 GATGCAGATCTTTGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTTGAACCCTC 17321 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||||| ||||| |||||||| || || |||||||| ||||| ||||| Sbjct 17320 GGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 17261 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || | |||||||||| || || |||||||| ||| Sbjct 17260 GCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGAT 17224 >seq584 Length=770825 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | ||||| |||| |||||||| || || || || || || || Sbjct 448539 ACAATGCAGATCTTCGTGAAAACCTTAACTGGTAAAACCATCACCCTAGAGGTCGAGCCC 448480 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || ||||||||| ||||| ||||| || || || || Sbjct 448479 AGTGACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGAC 448420 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | |||||||||| || || |||||||| ||| | | | |||| || || Sbjct 448419 CAGCAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTAC 448360 Query 24881 AACATTCAAAA 24891 ||||| || || Sbjct 448359 AACATCCAGAA 448349 >seq470 Length=855345 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || ||| || ||| || ||| | Sbjct 695821 GATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACCATTGAGCCCGAGGTTGAACCGTT 695762 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||||| || || | | | || || || |||||||| ||||| ||||| Sbjct 695761 GGACACTATAGAAAATGTCAAGTCCAGGCTTCAGGATAAGGAAGGAATTCCTCCTGATCA 695702 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||| | || || |||||||| ||| | | |||| || || || Sbjct 695701 GCAGAGGCTGATCTTTCCTGGTAAGCAGCTGGAAGATGGTCGTACTTTGTCTGACTACAA 695642 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||||| ||| || || || || | |||||| || Sbjct 695641 CATTCAAAGGGAGTCCACCCTTCATCTTGTGTTGAGA 695605 >seq245 Length=1203420 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || || || | || || || ||| Sbjct 2007 ATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCTTGGAGGTGGAGCCCAGT 1948 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 1947 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCGGACCAG 1888 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||||||||| || |||||||| ||| | | | | || ||||| ||| Sbjct 1887 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGATTACAAC 1828 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| ||||| || ||| |||| Sbjct 1827 ATCCAGAAGGAGTCGACCCTGCACCTGGT 1799 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || || || | || || || ||| Sbjct 1780 GATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTCGAGCCCAG 1721 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 1720 TGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCA 1661 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||| || |||||||| ||| | | | |||| || || || Sbjct 1660 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 1601 Query 24883 CATTCAAAA 24891 ||| || || Sbjct 1600 CATCCAGAA 1592 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| ||||| || || || || || || | | ||||||||||| || Sbjct 1362 AAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAG 1303 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||| ||| | | | | || ||||| ||||| || ||||| ||||| || ||| Sbjct 1302 CAGCTGGAAGATGGCCGCACCCTTTCTGATTACAACATCCAGAAGGAGTCGACCCTGCAC 1243 Query 24908 TTGGT 24912 |||| Sbjct 1242 CTGGT 1238 >seq5515 Length=93227 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 || ||||| ||| | || || || || || || || || || ||||| || ||| || Sbjct 74908 ATACAGATTTTTGTGAAGACCCTTACTGGGAAGACCATCACACTCGAGGTTGAACCCTTG 74967 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||||| ||||| ||| |||| | || |||||||| | ||| | ||| Sbjct 74968 GACACAATAGAAAATGTAAAGGCCAAGCTCCAGAATAAGGAAGGAATTCGTCCTGCTCAG 75027 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT-GTCAGATTATAA 24882 || | ||| |||||| || || |||||||| ||| | | | | ||| || || || Sbjct 75028 CAGAGGCTGACCTTTGCTGGTAAGCAGCTGGAAGATG-GCCATGCTTTGTCTGAATACAA 75086 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 ||||||||| ||| | || || || |||| Sbjct 75087 CATTCAAAAAGAACCCACCCTCCATCTTG 75115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449510727430040