Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq245 131 1e-25 seq584 107 1e-18 seq5258 104 2e-17 seq181 96.9 2e-15 seq186 91.5 1e-13 >seq245 Length=1203420 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | ||| ||||||||| ||||| || || || Sbjct 1781 CCACCCCTCAGGCGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 1840 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| ||||| ||||| || | |||||||| | || Sbjct 1841 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGG 1900 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || || ||| | || | ||| ||| ||| || Sbjct 1901 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACC 1960 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| ||||| |||||||| || ||||| ||||| Sbjct 1961 TCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 2007 Score = 118 bits (130), Expect = 7e-22 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 ||||| ||||| ||||| || ||| |||| |||| ||||| ||||| ||||| |||||| Sbjct 1592 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATC 1651 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 || | |||||||| | || | || |||||||| | || || || ||| | Sbjct 1652 AGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCA 1711 Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 || | ||| ||| |||||| || | ||| |||||||| || || |||||||| || ||| Sbjct 1712 ATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAG 1771 Query 34970 ATCTGCAT 34977 |||||||| Sbjct 1772 ATCTGCAT 1779 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | ||| ||||||||| ||||| || || || Sbjct 1220 CCACCCCTCAGGCGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 1279 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| ||||| ||||| || | |||||||| | || Sbjct 1280 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 1339 Query 34871 ACCCCCTCCTTGTC 34884 | || |||||||| Sbjct 1340 ATACCTTCCTTGTC 1353 >seq584 Length=770825 Score = 107 bits (118), Expect = 1e-18 Identities = 139/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 ||||| ||||| ||||| || ||| |||| |||| ||||| ||||| || || |||||| Sbjct 448349 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATC 448408 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 || | |||||||| | || | || |||||||| | || ||| ||||| || || Sbjct 448409 AGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGAC--ATTCT 448466 Query 34910 --ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 || | ||| ||| |||||| || | ||| ||||| || || || | ||| || || | Sbjct 448467 CAATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTTTTACCAGTTAAGGTTTTCACGA 448526 Query 34968 AGATCTGCAT 34977 |||||||||| Sbjct 448527 AGATCTGCAT 448536 >seq5258 Length=100039 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 |||| || || |||| ||| |||||| |||||||| ||||| || | | || || Sbjct 776 CTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCA 835 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || ||||| |||||||| || |||||||||| ||||| || | || | || ||||| Sbjct 836 TCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTA 895 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || || | |||| | || || || || || | || | | Sbjct 896 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGACG 955 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||||| |||||||| |||||||||||||| Sbjct 956 GTCTTTCCCGTCAGGGTCTTCACAAAGATCTGCAT 990 >seq181 Length=1381130 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34754 CCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGG 34813 || |||| | ||| |||||||| | |||| || ||||| || || ||||| || ||| Sbjct 683451 CCTCTCAGGCGCAGCACCAGGTGCAGGGTGGGCTTTTTCTGGATATTGTAGTCAGACAGG 683510 Query 34814 CTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACC 34873 ||||| |||| ||||| ||||| || ||| | ||||| | |||||||| | | | Sbjct 683511 GTGCGCCCATCCTCCAGCTGCTTGCCAGCGGATATCAGCCTCTGCTGGTCAGGTGAGATG 683570 Query 34874 CCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACAT 34931 || || ||| | | || || |||| | || || || | | | ||| ||| || | Sbjct 683571 CCTTCTTTGGCTTGGATCTTGGCTTTGGC--ATTCTCCATGGCATTACTGGGCTCAACCT 683628 Query 34932 CAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 || || |||||||| ||| | |||||| | | |||||||||||||| Sbjct 683629 CACAAGTGATGGTCTTGCCCATCAGGGTCCTCATGAAGATCTGCATGAT 683677 >seq186 Length=1368741 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 |||| || || |||| || | ||||||||||||||| ||||| || | | || || Sbjct 837441 CTCAACACAAGATGAAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGGCCA 837382 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || ||||| |||||| | || ||||||||| ||||| || | || | || ||||| Sbjct 837381 TCTTCCAGCTGCTTTTCAGCAGAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTA 837322 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || || | |||| | || || || | || | || ||| Sbjct 837321 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAGCCTCGAGCGTGATG 837262 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| |||||||| ||||| |||||||| Sbjct 837261 GTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 837227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325419734372867