Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1044 93.3 3e-14 seq5258 91.5 1e-13 seq1743 91.5 1e-13 seq806 82.4 6e-11 >seq1044 Length=525964 Score = 93.3 bits (102), Expect = 3e-14 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| |||||||| ||||| | ||||| || ||||| || || | | || | Sbjct 399821 AAGATGCAGATTTTTGTGAAAACCCTTACAGGGAAGACCATCACACTCAAGGCTGAACCC 399880 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 | || || | | | ||||| ||||| |||| ||||| | || ||| Sbjct 399881 TGGGACACAATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAGGGATTCCTCCTGAT 399940 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 ||||||||||| || | ||| || || |||||||| || | | || || | |||||| Sbjct 399941 CAGCAGAGACTGATCTTTGCTGGGAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 400000 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAA 107792 ||||||||||||||||| || | || | ||||||||| | || || || ||| ||| Sbjct 400001 AACATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTCCGTGGTGGTGCTAAGAAA 400060 Query 107793 A 107793 | Sbjct 400061 A 400061 >seq5258 Length=100039 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 ||||| ||||| | || |||||||||||||| || | ||| || || |||||||| Sbjct 897 GATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAA 838 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | | || || | |||||||||||||||||||||||||| | || | |||||| Sbjct 837 GATGGCCGTACTTTGTCTGACTACAACATTCAAAAGGAGTCTACCCTTCATCTTGTGTTG 778 Query 107769 AGATTGCGAGGGGGAAATAATAAAA 107793 ||| | || || || ||| |||| Sbjct 777 AGACTCCGTGGTGGTGCTAAGAAAA 753 >seq1743 Length=339712 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 ||||| ||||| | || |||||||||||||| || | ||| || || ||||| || Sbjct 2236 GATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATCTTTGCTGGAAAGCAGCTAGAA 2295 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | | | || || | |||||||||||||||||||||||||| | || | |||||| Sbjct 2296 GATGGCCATACTTTGTCTGACTACAACATTCAAAAGGAGTCTACCCTTCATCTTGTGTTG 2355 Query 107769 AGATTGCGAGGGGGAAATAATAAAA 107793 ||| | || || || ||| |||| Sbjct 2356 AGACTCCGTGGTGGTGCTAAGAAAA 2380 >seq806 Length=630265 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 ||||| ||||| | || |||||||||||||| || | ||| || || |||||||| Sbjct 94879 GATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAA 94820 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | | || || | |||||||||||||| |||||||| || | || | |||||| Sbjct 94819 GATGGCCGTACTTTGTCTGACTACAACATTCAGAAGGAGTCCACCCTTCATCTTGTGTTG 94760 Query 107769 AGATTGCGAGGGGGAAATAATAAAA 107793 ||| | || || || ||| |||| Sbjct 94759 AGACTCCGTGGTGGTGCTAAGAAAA 94735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398542375832377