Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq5258 105 5e-18 seq1868 96.9 3e-15 seq1743 96.9 3e-15 seq1044 96.9 3e-15 seq584 93.3 3e-14 seq2265 82.4 6e-11 >seq5258 Length=100039 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || ||||||||||| || || | | || || ||| Sbjct 778 CAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 837 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || || |||||| | |||| ||| |||||||| || ||||| || || || || Sbjct 838 TTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 897 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| |||||| || |||| || || || || | || Sbjct 898 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGACGGT 957 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | ||| || ||||| |||||||| || Sbjct 958 CTTTCCCGTCAGGGTCTTCACAAAGATCTGCATCTT 993 >seq1868 Length=317776 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/219 (70%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||| | ||||||| ||||||||||| || || | | || || ||| Sbjct 104815 CAACACAAGATGAGGGATGGATTCGTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 104874 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || || |||||| | |||| ||| |||||||| || ||||| || | || || Sbjct 104875 TTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTACTTATC 104934 Query 29694 TTGTA-ATTTTTG--TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || | || ||| || ||| |||||| ||| || || |||| || || || || || Sbjct 104935 CTGGATCTTGTTGGCCTTTACATTTTCTATAGTCTCTGAGGGTTCAACCTCGAGCGTGAT 104994 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || | ||| || ||||| || ||||| || Sbjct 104995 GGTCTTCCCCGTAAGGGTCTTCACAAAAATATGCATCTT 105033 >seq1743 Length=339712 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || ||||||||||| || || | | || | ||| Sbjct 2355 CAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATC 2296 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || || |||||| | |||| ||| |||||||| || ||||| || || || || Sbjct 2295 TTCTAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 2236 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || | | |||||| |||||| || |||| || || || || || || Sbjct 2235 CTGGATCTTGGCCTTTATATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 2176 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | || | ||| || ||||| |||||||| || Sbjct 2175 CTTCCTGGTCAGGGTCTTCACAAAAATCTGCATCTT 2140 >seq1044 Length=525964 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | || || ||| Sbjct 400036 CAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 399977 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || || |||||| | |||| ||| |||||||| || ||||| || || || | Sbjct 399976 TTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATCCCTTCCTTATT 399917 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| ||||| | |||| | | || || || || Sbjct 399916 CTGGATCTTGGCCTTTACATTTTCTATTGTGTCCCAGGGTTCAGCCTTGAGTGTGATGGT 399857 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| ||||| |||||||| || Sbjct 399856 CTTCCCTGTAAGGGTTTTCACAAAAATCTGCATCTT 399821 >seq584 Length=770825 Score = 93.3 bits (102), Expect = 3e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 29599 TTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATC 29658 || || ||||| || || | | |||||| ||| || || || ||||| ||| | ||| Sbjct 448349 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATC 448408 Query 29659 AATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCT 29718 | || ||||| || || || || || || ||||| || | ||| |||||| | || Sbjct 448409 AGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCA 448468 Query 29719 ACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAAT 29778 | |||||| | || || || || || || ||||| |||||||||||||| || || Sbjct 448469 ATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTTTTACCAGTTAAGGTTTTCACGAAG 448528 Query 29779 ATCTGCATT 29787 ||||||||| Sbjct 448529 ATCTGCATT 448537 >seq2265 Length=264906 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 29568 CAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCG 29627 ||| ||||||||||| || || ||| ||||| || || || || || | |||||| Sbjct 262258 CAAGCGCAGCACCAAGTGCAGGATGGTCTCTTTCTGGATATTGTAGTCGGACTGGGTGCG 262317 Query 29628 AGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTC 29687 ||| || || || |||||||| |||||| || ||||| || || || || || || Sbjct 262318 GCCATCCTCCAGCTGCTTGCCAGCGAATATCAGCCTCTGCTGGTCGGGTGGGATGCCTTC 262377 Query 29688 TTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAG 29746 ||||||| | || || | |||||| | || | |||||| |||| | ||||||| Sbjct 262378 CTTGTCTT-TGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCGTCCTCAAGAG 262436 Query 29747 TTATAGTTTTGCCAGTTAA 29765 | || | ||||| || || Sbjct 262437 TGATGCTCTTGCCCGTCAA 262455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384896226564813