Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq376 111 1e-18 seq2429 95.1 9e-14 seq912 89.7 4e-12 seq2164 87.8 1e-11 >seq376 Length=984990 Score = 111 bits (122), Expect = 1e-18 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||| || ||||| || || | |||| | || | ||| || ||||| ||||| ||| Sbjct 520528 CAAAAACTGTGTTGGTGGGGTTCATTGCAACCTGGTTTTTCGCAGCATCCCCAATTAGAC 520587 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||||||| || ||||| | |||||| ||||| || || ||||| || ||||| |||| Sbjct 520588 GTTCTGTGTCCGTAAAAGCAACATAGCTCGGAGTGGTTCGGTTACCCTGGTCATTGGCAA 520647 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 ||||||| || || |||| || | ||||| ||||| | || || || | ||||| Sbjct 520648 TAATTTCCACCTTTCCATGCTGGAAGACACCCACACAGGAGTAGGTGGTGCCAAGATCAA 520707 Query 282870 TACCAA 282875 | |||| Sbjct 520708 TGCCAA 520713 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || ||||| | ||||| |||| ||||||||||||||||||||| ||||||| | ||| Sbjct 519832 TTCTTATCTAAGCCATAAGCAATAGCAGCAGCAGTTGGTTCATTGATAATTCGAAGTACA 519891 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| |||||||| |||| |||||||| || || |||| || || || || || || Sbjct 519892 TTAAGGCCAGCAATAGTTCCAGCATCTTTTGTTGCCTGTCGCTGAGAGTCATTGAAGTAA 519951 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || || || | || |||| Sbjct 519952 GCTGGCACTGTGACCACAGCAT 519973 Score = 89.7 bits (98), Expect = 4e-12 Identities = 355/552 (64%), Gaps = 14/552 (3%) Strand=Plus/Plus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| ||||||||||||||||| |||| | | || |||| ||| || ||||| Sbjct 519187 GCACCATAAGCAACAGCTTCATCAGGGTTAATGCTCTTGTTCAGTTCTTTCCCGTTGAAG 519246 Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 || | | ||||| | ||| | ||| || || | || || || ||||| | ||||| Sbjct 519247 AAGTCTTGCAGAAGCT-TCTGAATCTTGGGGATTCTAGTAGAACCACCAACCAGAACAAT 519305 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 ||||| | |||||| || || ||||| | ||| | | ||||| || || || || Sbjct 519306 GTCATGAATCTGTGACTTGTCAAGTTTGGCATCGCGAAGGGCCTTTTCTACAGGATCCAG 519365 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 282015 | | |||| ||| | | | ||| || ||| ||| | |||| || | || Sbjct 519366 TGTGCCACGGAACAGGTCAGCATTCAATTCCTCAAATCGAGCACGGGTAATAGAGGTATA 519425 Query 282016 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075 | |||||||| || | | |||||||| ||||| | | || || || || || Sbjct 519426 GAAGTCAATTCCCTCATAGAGAGAATCAATCTCAATACTGGCCTGGGTGCTGGAGGAGAG 519485 Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTC-GTAAG---GCTTTTGCTGATT 282131 | || ||||| |||||||| || || | || | | | || ||| | || | | Sbjct 519486 GGTGCGCTTAGCCCGTTCACAGGCAGTACGGAGACGCCTGACAGCTCTCTTGTTCTCACT 519545 Query 282132 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACG 282189 ||| || | || | |||| || || || ||| | ||| | || | || Sbjct 519546 GAT----GTCCTTCTTGTGCTTTCGTTTAAACTCAGCAATGAA--ATGGTTGACCATTCG 519599 Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249 |||||||| ||||| || ||||| | || | ||| | || | | | |||| |||| Sbjct 519600 GTTATCAAAGTCTTCTCCACCCAAGTGGGTGTCTCCAGCTGTGGATTTCACTTCAAAAAT 519659 Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 ||||| |||| | | | | |||||| || ||||| |||| |||||||| || Sbjct 519660 GCCATCCTCAATTGTGAGGATTGACACATCAAAAGTACCACCTCCCAAGTCAAAAATCAG 519719 Query 282310 TACATTCATTTC 282321 || ||| |||| Sbjct 519720 CACGTTCCTTTC 519731 >seq2429 Length=246919 Score = 95.1 bits (104), Expect = 9e-14 Identities = 215/318 (68%), Gaps = 18/318 (6%) Strand=Plus/Plus Query 281254 GTGAGTATAATTTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCT 281311 || || ||| |||| |||||||| | | |||| || ||| ||| ||| || ||| Sbjct 213416 GTAAGCATAGCTTTCCAATTCATTCCTGGTGTCAAT-GC-GCTCTTTGAGCTTTTTGTCT 213473 Query 281312 GCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCT----TCAGAGAA 281367 | || | || | | ||| || ||| ||| || ||||||| || ||||| | Sbjct 213474 TCCTCAGCGAACTTCTCAGCATCATTAACCATCCTTTCAATTTCTTCAGGAGTCAGACGA 213533 Query 281368 TCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGA---TTTATCAGC 281424 | || | | ||| ||||| || || || || ||||||| || ||| || | Sbjct 213534 TTTT----GGTCATTGGTAATTGTGATTTTGTT---TTTGTTTCCTGTACCTTTGTCTTC 213586 Query 281425 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 281484 || ||||| |||||||||||| |||| | ||||| |||||||||||||| || || Sbjct 213587 AGCTGTCACTCGAAGAATACCATTAACATCTATCTCAAAAGTGACTTCAATTTGGGGTAC 213646 Query 281485 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 281544 ||| | ||||||| || ||||| || || |||||| |||||| || || ||||| Sbjct 213647 CCCACGGGGAGCAGGAGGAATCCCAGTCAGATCAAATGTACCCAGAAGATGGTTGTCTTT 213706 Query 281545 AGTGAATTTTCGTTCACC 281562 || | ||||||||| Sbjct 213707 TGTTAGGGGTCGTTCACC 213724 >seq912 Length=585927 Score = 89.7 bits (98), Expect = 4e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || || ||||| ||||| ||||| ||||||||| | || || | ||||| Sbjct 555159 TGTTGTGGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCAAAGTTAT 555100 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| || ||||||||| | || || ||||| || ||||| || ||||| || || Sbjct 555099 TCATTATGGCGCTCCCAAGGAAATGGAGTCCTATTACCAGGAAATCGGCAGAGCTGGCCG 555040 Query 131296 TGATGGA 131302 ||||||| Sbjct 555039 TGATGGA 555033 >seq2164 Length=276870 Score = 87.8 bits (96), Expect = 1e-11 Identities = 181/261 (69%), Gaps = 9/261 (3%) Strand=Plus/Minus Query 281672 CCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGA 281731 |||||||| ||||| | ||| | ||||||||||||||||| | || | | || | | Sbjct 35678 CCACCAGCAGTTTCAATTCCAGG-GAAAGAGGAGTGACATCCAACAGCAACAAATCCTTA 35620 Query 281732 AGTTTTTCATCAG-TTTGAC--CAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCA 281788 | | ||| |||| |||| | | | ||| ||||| ||| ||| |||||||| ||| Sbjct 35619 A--TGTTC-TCAGATTTGTCTCCTGATAAAATGGCTGCCGGAACAGCTGCACCATAAGCA 35563 Query 281789 ACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGA 281848 ||||||||||| || |||| | | ||| |||| || || ||||| || | | ||| Sbjct 35562 ACAGCTTCATCGGGGTTAATGTTCTTATTCAGTTCCTTTCCGTTGAAGAAGTCTTGCAGA 35503 Query 281849 AGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTG 281907 || | ||| | ||| || || | | || || | || | ||||| ||||| | ||| Sbjct 35502 AGCT-TCTGAATCTTGGGGATTCTGGTAGAACCACTGACCAGAACAATATCATGAATCTG 35444 Query 281908 TGATTTATCCAGTTTTGAATC 281928 ||| || || ||||| | ||| Sbjct 35443 TGACTTGTCAAGTTTGGCATC 35423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3737252954419218