Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq5258 145 1e-29 SEQ11613 141 2e-28 seq1743 141 2e-28 seq806 127 4e-24 seq186 125 1e-23 seq4084 120 6e-22 seq1868 120 6e-22 seq1044 118 2e-21 seq5515 102 2e-16 seq470 100 6e-16 seq8342 93.3 8e-14 seq26 93.3 8e-14 SEQ17914 91.5 3e-13 seq309 87.8 4e-12 >seq5258 Length=100039 Score = 145 bits (160), Expect = 1e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || ||||| || || || || || || ||||| | | | | || ||||| || || Sbjct 788 TGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGC 847 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 |||||||||||||| ||||| || ||||| ||||| |||||||||||||| || ||||| Sbjct 848 TTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 907 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || || || ||||| || || | || | ||||| || ||| Sbjct 908 GCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGACGGTCTTTCCCGTC 967 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| |||||||| Sbjct 968 AGGGTCTTCACAAAGATCTGCAT 990 >SEQ11613 Length=25137 Score = 141 bits (156), Expect = 2e-28 Identities = 137/176 (78%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 82635 TAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGA 82694 || ||||| | | | | || ||||| || || |||||||||||||| ||||| || ||| Sbjct 17204 TAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGA 17263 Query 82695 TCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTA 82754 || ||||| |||||||||||||| || ||||| || ||||||||||| || || || Sbjct 17264 TCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAG 17323 Query 82755 GGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | ||| || ||||| || |||| ||||| ||||| |||||||| Sbjct 17324 GGTTCAACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAGATCTGCAT 17379 >seq1743 Length=339712 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || ||||| || || || || || || ||||| | | | || |||||||| || Sbjct 2345 TGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCTTCTAGCTGC 2286 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 |||||||||||||| ||||| || ||||| ||||| |||||||||||||| || ||||| Sbjct 2285 TTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 2226 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || |||| |||||| || || || ||||| || || | || || ||||| | ||| Sbjct 2225 GCCTTTATATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCTGGTC 2166 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| |||||||| Sbjct 2165 AGGGTCTTCACAAAAATCTGCAT 2143 >seq806 Length=630265 Score = 127 bits (140), Expect = 4e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || ||||| || || || ||||| | | | | || ||||| || || Sbjct 94770 TGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGC 94829 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 |||||||||||||| ||||| || ||||| ||||| |||||||||||||| || ||||| Sbjct 94830 TTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 94889 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || |||||||| || || || ||||| | | | | || ||||| || || Sbjct 94890 GCCTTAACATTTTCTATAGTGTCTGAGGGTTCAGCCTTGAGCATGATGGTCTTCCCCGTA 94949 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| |||||||| Sbjct 94950 AGGGTCTTCACAAAAATCTGCAT 94972 >seq186 Length=1368741 Score = 125 bits (138), Expect = 1e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 82617 GATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCA 82676 || || ||||| || || || ||||| | | | | || ||||| || || ||| ||||| Sbjct 837420 GACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTTTCAGCA 837361 Query 82677 AAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACA 82736 |||| ||||| || ||||| ||||| |||||||||||||| || ||||| || |||||| Sbjct 837360 GAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 837301 Query 82737 TTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTT 82796 ||||| || || || | ||| | || | || || ||||| || || | ||||| Sbjct 837300 TTTTCTATAGTGTCCGAGGATTCAGCCTCGAGCGTGATGGTCTTCCCCGTAAGGGTCTTC 837241 Query 82797 ACAAATATCTGCAT 82810 ||||| |||||||| Sbjct 837240 ACAAAAATCTGCAT 837227 >seq4084 Length=139134 Score = 120 bits (132), Expect = 6e-22 Identities = 146/199 (73%), Gaps = 5/199 (3%) Strand=Plus/Plus Query 82617 GATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCA 82676 || || ||||| || || || ||||| | | | | || ||||| || || ||||||||| Sbjct 21920 GACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTTCCAGCA 21979 Query 82677 AAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTC-----CTTATCTTGAATCTTTGCTT 82731 |||| ||||| || ||||| ||||| |||||||| |||||| || ||||| || | Sbjct 21980 GAGATCAGTCTCTGCTGATCAGGAGGCATTCCTTCTGGATCTTATCCTGGATCTTGGCCT 22039 Query 82732 TTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACG 82791 |||||||||| || || || ||||| || || | || || ||||| || | | | Sbjct 22040 TTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCTTAAGGG 22099 Query 82792 TCTTTACAAATATCTGCAT 82810 |||| ||||| |||||||| Sbjct 22100 TCTTCACAAAAATCTGCAT 22118 >seq1868 Length=317776 Score = 120 bits (132), Expect = 6e-22 Identities = 145/197 (74%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 82617 GATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCA 82676 ||||| || || || || || ||||| | | | | || ||||| || || || |||||| Sbjct 104834 GATTCGTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTCCCAGCA 104893 Query 82677 AAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC---TTTGCTTTT 82733 ||||| ||||| || ||||| ||||| ||||||| |||||| || ||| || || ||| Sbjct 104894 AAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTACTTATCCTGGATCTTGTTGGCCTTT 104953 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 |||||||| || || || ||||| || || | || || ||||| || || | ||| Sbjct 104954 ACATTTTCTATAGTCTCTGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGTAAGGGTC 105013 Query 82794 TTTACAAATATCTGCAT 82810 || ||||| || ||||| Sbjct 105014 TTCACAAAAATATGCAT 105030 >seq1044 Length=525964 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || || || || ||||| | | | | || ||||| || || Sbjct 400026 TGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGC 399967 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| ||||| || ||||| ||||| || |||||||||| || ||||| Sbjct 399966 TTCCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATCCCTTCCTTATTCTGGATCTTG 399907 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || || || ||||| | | | || || ||||| ||||| Sbjct 399906 GCCTTTACATTTTCTATTGTGTCCCAGGGTTCAGCCTTGAGTGTGATGGTCTTCCCTGTA 399847 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || || ||||| |||||||| Sbjct 399846 AGGGTTTTCACAAAAATCTGCAT 399824 >seq5515 Length=93227 Score = 102 bits (112), Expect = 2e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || | |||||| || || || || ||||| | | || ||||| || || Sbjct 75110 TGGAGGGTGGGTTCTTTTTGAATGTTGTATTCAGACAAAGCATGGCCATCTTCCAGCTGC 75051 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||| | || || || ||| | ||| | ||||||||||||| || | ||| Sbjct 75050 TTACCAGCAAAGGTCAGCCTCTGCTGAGCAGGACGAATTCCTTCCTTATTCTGGAGCTTG 74991 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || || || ||||| || || | || || ||||| || || Sbjct 74990 GCCTTTACATTTTCTATTGTGTCCAAGGGTTCAACCTCGAGTGTGATGGTCTTCCCAGTA 74931 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| ||||| ||||| ||| Sbjct 74930 AGGGTCTTCACAAAAATCTGTATT 74907 >seq470 Length=855345 Score = 100 bits (110), Expect = 6e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || | || || || || ||||| | | | | ||| ||||| || || Sbjct 695618 TGAAGGGTGGACTCCCTTTGAATGTTGTAGTCAGACAAAGTACGACCATCTTCCAGCTGC 695677 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||| |||||| || || || ||||| ||||| |||||||||||||| |||| | | Sbjct 695678 TTACCAGGAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGAAGCCTG 695737 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | || |||||||| || || || ||||| || || || ||||| || || Sbjct 695738 GACTTGACATTTTCTATAGTGTCCAACGGTTCAACCTCGGGCTCAATGGTCTTCCCCGTG 695797 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| |||||||| Sbjct 695798 AGGGTCTTCACAAAGATCTGCAT 695820 >seq8342 Length=48445 Score = 93.3 bits (102), Expect = 8e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || |||||||||| || || || |||| | ||| |||||||||||| Sbjct 15245 TCTTCCAGCTGCTTACCAGCAAAGAGCAGCCTCTGCTGATTAGAAGGAATTCCTTCCTTA 15186 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || ||||||||||| | ||||| ||| || |||| || || Sbjct 15185 TCCTGGATCTTGGCCTTTACATTTTCTCTAGTATCCAAGTTTTCAACCTCCAGTGTGATG 15126 Query 82776 GTCTTGCCTGTCAACGTCTTTACA 82799 ||||| ||||| | |||||| || Sbjct 15125 GTCTTCCCTGTAAGGGTCTTTGCA 15102 >seq26 Length=2694412 Score = 93.3 bits (102), Expect = 8e-14 Identities = 138/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 82619 TTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAA 82678 |||||| || || || || ||||| | ||| | | | | | | || ||||| |||||||| Sbjct 2339559 TTCTTT-TGAATGTTGTAGTCAGACAAAATAC-AGCATATGCCAGGTGTTTACCAGCAAA 2339616 Query 82679 GATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATT 82738 ||| || ||||| | ||| |||| ||| ||| |||||| || ||| | || || ||||| Sbjct 2339617 GATCAGCCTTTGCTCATCAGGAGAAATTTCTTTCTTATCCTGGATCATGGCCTTGACATT 2339676 Query 82739 TTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798 ||| | || || ||||| | | || || || ||||||| || | ||||| || Sbjct 2339677 TTC--TAGTGTCTGAGGGTTCAGCCTTGAATGTGATGGTCTTGCTGGTAAGGGTCTTCAC 2339734 Query 82799 AAATATCTGCAT 82810 ||| |||||||| Sbjct 2339735 AAAAATCTGCAT 2339746 >SEQ17914 Length=8076 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 || || ||| || ||||||| || || || ||||| || || || || || || | Sbjct 1836 GTACATAGTGGACTCTTTCTTGATGTTGTAGTCAGACAGGATGTGGCCATCCTCCAGCTT 1777 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || |||| || || || || | || || || || || |||||||| ||||| |||| Sbjct 1776 CTTGCCAGTGAATATCAGCCTCTTCTGGTCAGGTGGGATACCTTCCTTGTCTTGGCTCTT 1717 Query 82727 TGCTTTTACATTTTCAATCGTAT--CATTAGGTTCTAC--TTCCAAAGTTATCGTCTTGC 82782 || || ||||| | || || | || | || || || ||| | ||| || ||||||| Sbjct 1716 GGCCTTGACATTCTTGATGGTGTGTCACTGGGCTCGACCTTTCAAGAGTGATGGTCTTGC 1657 Query 82783 CTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || |||||||| |||||||| Sbjct 1656 CTGTCAGGGTTTTTACAAAGATCTGCAT 1629 >seq309 Length=1089319 Score = 87.8 bits (96), Expect = 4e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 |||||| || || || ||||| || || |||||||| || | | || ||||| || || Sbjct 175570 GTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGGGTGCGGCCATCTTCCAGCTG 175511 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 ||| || |||||| | | || || || | | || || ||||||||||| | ||||| Sbjct 175510 TTTGCCGGCAAAGCTAGGCCTCTGCTGGCCCAGTGGGATGCCTTCCTTATCCTAGATCTT 175451 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCA 82767 || || ||||| ||||| || ||| | || || || |||| Sbjct 175450 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCA 175410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980961807380827