Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq584 136 4e-27 seq245 136 4e-27 seq2265 114 1e-20 SEQ17914 98.7 1e-15 seq181 93.3 4e-14 seq1743 84.2 2e-11 >seq584 Length=770825 Score = 136 bits (150), Expect = 4e-27 Identities = 145/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531 ||||| || ||||| ||| || ||| | | | || || |||||||||||||| | || Sbjct 448349 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGCCCGCAAAGAT 448407 Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591 |||| ||||||||| || ||||||||||||||||| ||||||| ||||| | ||| Sbjct 448408 CAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTC 448467 Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651 || ||||| ||||||| || || | ||||| |||||| || || | ||||| ||||| Sbjct 448468 AATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTTTTACCAGTTAAGGTTTTCACGAA 448527 Query 133652 AATCTGCAT 133660 |||||||| Sbjct 448528 GATCTGCAT 448536 >seq245 Length=1203420 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 1810 GGTCGACTCCTTCTGGATGTTGTAATCAGAAAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 1868 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || ||||||||||||||||| |||||| || Sbjct 1869 CGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCCT 1928 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| |||||||||| || | ||||| ||| ||||| ||||| | Sbjct 1929 TCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCCGTCAGGG 1988 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| || ||||| Sbjct 1989 TCTTCACGAAGATTTGCAT 2007 Score = 122 bits (134), Expect = 8e-23 Identities = 142/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531 ||||| || ||||| ||| || ||| | | | || || ||||||||||| || | || Sbjct 1592 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGCCGGCAAAGAT 1650 Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591 |||| ||||||||| || || || ||||||||||| |||||| ||| | | ||| Sbjct 1651 CAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTC 1710 Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651 || ||||| ||||||| || || | ||||| ||| ||||||||||| || || ||||| Sbjct 1711 AATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAA 1770 Query 133652 AATCTGCAT 133660 |||||||| Sbjct 1771 GATCTGCAT 1779 >seq2265 Length=264906 Score = 114 bits (126), Expect = 1e-20 Identities = 132/175 (75%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 133465 TGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCC 133523 ||| ||||||||| |||||||| ||| | ||| | | | ||||| ||||||||||| Sbjct 262281 TGGTCTCTTTCTGGATATTGTAGTCGGACTGGGTGCGGCCA-TCCTCCAGCTGCTTGCCA 262339 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || |||| |||||||||||| ||||||||||||||||| ||||||| |||| Sbjct 262340 GCGAATATCAGCCTCTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTTGATCTTGGCCTTG 262399 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 | | ||| | ||||| |||| || | || | |||| | | ||||| |||| Sbjct 262400 ACATTCTCGATGGTGTCACTGGGTTCGTCCTCAAGAGTGATGCTCTTGCCCGTCA 262454 >SEQ17914 Length=8076 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 133461 ATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTT 133519 || ||||||||||||| || ||||| || || || | | | ||||| |||| ||| Sbjct 1832 ATAGTGGACTCTTTCTTGATGTTGTAGTCAGACAGGATGTGGCCA-TCCTCCAGCTTCTT 1774 Query 133520 GCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG 133579 ||| | | | || |||| || |||||| || ||||| ||||||||||| | |||| Sbjct 1773 GCCAGTGAATATCAGCCTCTTCTGGTCAGGTGGGATACCTTCCTTGTCTTGGCTCTTGGC 1714 Query 133580 CTTGAGCTGCTCAA--CCGTGTCGGTGGGCTCCAC--GTCGACGGTGACGGTTTTGCCGG 133635 ||||| | || | ||||| ||||||| || || | |||| ||| ||||| | Sbjct 1713 CTTGACATTCTTGATGGTGTGTCACTGGGCTCGACCTTTCAAGAGTGATGGTCTTGCCTG 1654 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 |||| |||||||| || ||||||||| Sbjct 1653 TCAGGGTTTTTACAAAGATCTGCATG 1628 >seq181 Length=1381130 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || |||||| |||||||| || || ||| | ||||| ||||||||||| Sbjct 683477 GGTGGGCTTTTTCTGGATATTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTGCC 683536 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || |||| ||||||||| || | ||||||||| ||| | |||| || |||| Sbjct 683537 AGCGGATATCAGCCTCTGCTGGTCAGGTGAGATGCCTTCTTTGGCTTGGATC-TTGGCTT 683595 Query 133583 GAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 || | ||| | | | ||||||| || || |||| ||| ||||| |||| | Sbjct 683596 TGGCATTCTCCATGGCATTACTGGGCTCAACCTCACAAGTGATGGTCTTGCCCATCAGGG 683655 Query 133642 TTTTTACGAAAATCTGCATG 133661 | | | ||| ||||||||| Sbjct 683656 TCCTCATGAAGATCTGCATG 683675 >seq1743 Length=339712 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| || || || ||||| || || || | | | || || |||| Sbjct 2346 ATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCA-TCTTCTAGCT 2288 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || || | |||||| || ||||| || |||||||| || ||||| Sbjct 2287 GCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCT 2228 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | || | ||||| | ||| || || |||| |||| ||| || | || Sbjct 2227 TGGCCTTTATATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCTGG 2168 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || ||||||||||| Sbjct 2167 TCAGGGTCTTCACAAAAATCTGCAT 2143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483005100411320