Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq951 284 1e-71 seq5770 140 4e-28 seq4844 140 4e-28 >seq951 Length=571742 Score = 284 bits (314), Expect = 1e-71 Identities = 623/929 (67%), Gaps = 11/929 (1%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || |||||||||| ||||| ||| ||| Sbjct 399742 CCAGGGCTTTATGCCTCAGATGCTCATCCAGACACTGGATGGCGAAGGGGTCGACGTCCA 399801 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 ||||||||||| || || ||||| ||| || || ||||| | | ||||||| Sbjct 399802 TGTCGAACTTGTTGGCAAAAAGGTGGTGC---TTGCGCAGCATCCATCTCAAGTCCCCCG 399858 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| ||||||||||| ||||||||||| || ||||||| || || | || || Sbjct 399859 CTCCGAAGACGCACACGGAGCGCACGTGCACTCCATTGCACGGGGGGTAAGGAGCGCCTC 399918 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | || || || ||| |||| |||||||| || ||||| | ||| || | |||||| | Sbjct 399919 TGGAAACGTCGCCTTCGAAGTACTGCCACTTGACAAACCTCGCGATGGCATTCATGTCAG 399978 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACG-GCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357 | ||| ||||| | ||| || || | ||||| || | || | | ||| | | Sbjct 399979 ACAAGTCATACTTATTG-CTGGAGGGGCGAGAACCAGGGACTTCAGGGATCCGCTGGATA 400037 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417 || ||||| ||| |||||||| || || || |||| || ||| |||||||||| | Sbjct 400038 GTGGCCCAAAGGAACTCGTCTGGGCTGTATGTGTCCTGCGCCCATTCCATGAACTTTTGG 400097 Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 | ||| || | ||| | | || || ||| | || | |||||| ||||| Sbjct 400098 ATATTTTCATTTTCTAGCACATGGCCTACATATTCCCTACTGACCACAAAGTAGGCGCTG 400157 Query 162478 CCAGAAAACACGGG---TATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACT 162534 || ||||| | || | || || ||||| || ||||| || || ||||| Sbjct 400158 CCTGAAAAAAGAGGAGTTTTGAGT---GGAGGCTGCGCTTTGGCTACCCCAGTGTTAGTC 400214 Query 162535 ACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG 162594 | | | || || || | ||| | ||| |||| || | ||| ||| || | Sbjct 400215 AGCTTCCCATCAACAATGGTGTGCCGCTTTTTCCATCTTTCTTCCTTGTTGGGAGGCATC 400274 Query 162595 TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGA 162654 | || || || || |||| ||| || | ||| |||| | || || || || Sbjct 400275 TTCTCAGTTTCCAGGTTGTTTTCACCTATGAACGACTTGAGCTTCCTGACAATTTCCAGG 400334 Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 ||||| |||| || || || | || ||||||||||| | || ||||| || | | Sbjct 400335 TTGGTTTTAATAGGGAAATCCATACCACAGAGATTAATCAAGTACTTCCAGTTTGCATTC 400394 Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774 | || |||||| |||| | ||||| || |||||||| || |||||||| || || || Sbjct 400395 ATTCTGTACAGGTCCTTCATGCAGTTGAGGTCGGCCTGAACCCGACTCCAGGAGGCATAA 400454 Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834 || || |||||||| |||| ||||||||||| ||||| || || | || ||| | Sbjct 400455 ACAACATTCTCCAACTGGCTGGCCACAAAGACATTATCGAAGCAGGACGCAATGCCCGCC 400514 Query 162835 ACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGA 162894 || || | | || || |||||| | || || || | |||||| | |||||| Sbjct 400515 ACTGCGGCTAAAAAGGATTCCTCTGCTTTCTTGTCCACATGGATGCAGTAGAAATTCTGG 400574 Query 162895 GGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATA 162954 || ||||||||||||||| | || || | ||| || ||||||||||| |||||||| Sbjct 400575 GGCATGTAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATCTTATGGTGAACCACGATG 400634 Query 162955 GAATACGCTATGGGGAACTCAGCCTCCTC 162983 ||||| || || || || | ||||| || Sbjct 400635 GAATATGCAATTGGAAAGCCTGCCTCTTC 400663 >seq5770 Length=87801 Score = 140 bits (154), Expect = 4e-28 Identities = 438/665 (66%), Gaps = 19/665 (3%) Strand=Plus/Plus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || || | |||||| || | | || || | | | Sbjct 16205 TCCAGTTAAAGTAACTAAGGTACAGCTTATTGTTTTTGTCAACTTCCTTCAGATACTTTG 16264 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 ||| || | || || | || || | ||| |||||||| | || | || | |||| Sbjct 16265 CCAACTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCAGCTGGAATATAAT 16324 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || |||| ||| || || | ||||| | || |||| || | Sbjct 16325 TCTCATAGTTTTCCCTAGATGGTCCAAGGACAACAGGTACTGAGCCAGCCAAAAATGCAT 16384 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || || | || | || || || || | ||||| |||| Sbjct 16385 TGTAGAGCTTTTCTGTGATGTAATCTTTATGAATTGAATTTTCGAAAGACAGATAAAATT 16444 Query 177127 TACAGGAAGATAGTAGCGGGA-TGAAGTCATCATCGGGTATATAATCTCCTACTACGTTC 177185 |||| | ||||| | | |||| | | || | ||| | ||| ||||| | | | | Sbjct 16445 TACAAGTAGATA-TGGTGGGAATCAGGTTTTTATCATTCACATACTCTCCAAACGCTTGC 16503 Query 177186 CCGTATACATGTATATCT--ATGTGTTTACTGAGCTCTAGGTAGTATCTCGATC-TCACG 177242 || |||| ||| |||| || || |||||||| |||||| || || | | | Sbjct 16504 CC--ATACGTGTGGATCTCAATACTCTTGCTGAGCTCGTTGTAGTA-CTTGACCCTGGCA 16560 Query 177243 TGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCG-GGAACGGG 177301 || || |||||| || || ||||||||||| || ||||| ||||||| || || Sbjct 16561 TGTTCAGGGTTCCAGTTACTCACGACCCAGCACACCAACTTT-TCTTTGCTTGGCAC--- 16616 Query 177302 ATTCGAT-ACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| | || || | | | || | ||| | | ||||| ||||| |||||||| | Sbjct 16617 -TTCAAACACAAAGGGATTCGTGCTCACCGTCAAGAACCCATAAGGCACTTGAATATCTG 16675 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC--TTGTTTGAAGGG 177418 ||||||| | ||| || | || || ||||| | || || || || | |||| ||| Sbjct 16676 AGTCGCGGCGGTAGGTCAGAGTCAGGTTGAACAAGTGCTCAATGCCACTCTTTTG--GGG 16733 Query 177419 GCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTC 177478 | | | | |||| || || ||||||||||| |||||||| ||||||| ||| |||| | Sbjct 16734 GGTATGAGTGGGTGACTCCAAGTTCATCCAAATCCACTTCTGAAAGGGTGGCCTGGCCTG 16793 Query 177479 CGTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGC 177538 | ||||| || |||| || || ||||||||||| | | || || | || Sbjct 16794 CTGAGGTAAGTTAGTCAGATCCCAGCTGATGTCTCTGTGGTGTATCAGGACCGCGTGGGA 16853 Query 177539 TTTGT 177543 ||||| Sbjct 16854 TTTGT 16858 Score = 140 bits (154), Expect = 4e-28 Identities = 438/665 (66%), Gaps = 19/665 (3%) Strand=Plus/Minus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || || | |||||| || | | || || | | | Sbjct 71597 TCCAGTTAAAGTAACTAAGGTACAGCTTATTGTTTTTGTCAACTTCCTTCAGATACTTTG 71538 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 ||| || | || || | || || | ||| |||||||| | || | || | |||| Sbjct 71537 CCAACTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCAGCTGGAATATAAT 71478 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || |||| ||| || || | ||||| | || |||| || | Sbjct 71477 TCTCATAGTTTTCCCTAGATGGTCCAAGGACAACAGGTACTGAGCCAGCCAAAAATGCAT 71418 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || || | || | || || || || | ||||| |||| Sbjct 71417 TGTAGAGCTTTTCTGTGATGTAATCTTTATGAATTGAATTTTCGAAAGACAGATAAAATT 71358 Query 177127 TACAGGAAGATAGTAGCGGGA-TGAAGTCATCATCGGGTATATAATCTCCTACTACGTTC 177185 |||| | ||||| | | |||| | | || | ||| | ||| ||||| | | | | Sbjct 71357 TACAAGTAGATA-TGGTGGGAATCAGGTTTTTATCATTCACATACTCTCCAAACGCTTGC 71299 Query 177186 CCGTATACATGTATATCT--ATGTGTTTACTGAGCTCTAGGTAGTATCTCGATC-TCACG 177242 || |||| ||| |||| || || |||||||| |||||| || || | | | Sbjct 71298 CC--ATACGTGTGGATCTCAATACTCTTGCTGAGCTCGTTGTAGTA-CTTGACCCTGGCA 71242 Query 177243 TGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCG-GGAACGGG 177301 || || |||||| || || ||||||||||| || ||||| ||||||| || || Sbjct 71241 TGTTCAGGGTTCCAGTTACTCACGACCCAGCACACCAACTTT-TCTTTGCTTGGCAC--- 71186 Query 177302 ATTCGAT-ACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| | || || | | | || | ||| | | ||||| ||||| |||||||| | Sbjct 71185 -TTCAAACACAAAGGGATTCGTGCTCACCGTCAAGAACCCATAAGGCACTTGAATATCTG 71127 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC--TTGTTTGAAGGG 177418 ||||||| | ||| || | || || ||||| | || || || || | |||| ||| Sbjct 71126 AGTCGCGGCGGTAGGTCAGAGTCAGGTTGAACAAGTGCTCAATGCCACTCTTTTG--GGG 71069 Query 177419 GCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTC 177478 | | | | |||| || || ||||||||||| |||||||| ||||||| ||| |||| | Sbjct 71068 GGTATGAGTGGGTGACTCCAAGTTCATCCAAATCCACTTCTGAAAGGGTGGCCTGGCCTG 71009 Query 177479 CGTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGC 177538 | ||||| || |||| || || ||||||||||| | | || || | || Sbjct 71008 CTGAGGTAAGTTAGTCAGATCCCAGCTGATGTCTCTGTGGTGTATCAGGACCGCGTGGGA 70949 Query 177539 TTTGT 177543 ||||| Sbjct 70948 TTTGT 70944 >seq4844 Length=112033 Score = 140 bits (154), Expect = 4e-28 Identities = 224/322 (70%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 ||||||| || || || | | ||||| | || || || ||||| ||||| || | || Sbjct 90827 CATAGAGGGTGAGGCAAGCTGTTCCCGAGACCTTCCCAGAACCAAAGGTATTGAAGAGAC 90886 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| | ||||| || || ||||| ||||||||||| || || | | | || | || Sbjct 90887 ACATGTAGCAGCCCTCATCATCCACTGTGGTGTTCCAGAAGGTGATGCTCGTGTTCCAGA 90946 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || | |||||||| || | ||| | || | ||||||||| ||||| || || Sbjct 90947 GTCCCAGCTCAGTAATGTTTACTCTGTCTCTATAGGCAGGCTGGACCACAACCCCATGGG 91006 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 | | |||| | ||| |||||| || |||||| || || |||||||||| || || | Sbjct 91007 TTTTGCTGTAAGTGATCATGTTCTCTGGGCTCACGGCTTTCTTCTTCTGCCATGTCACAA 91066 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || ||| | |||| ||||| |||| ||| || |||| ||||| | | Sbjct 91067 TCAAGGGTTCCTGAGATGTTTTCAGAGAACATCGTAAGGATGCAGATGTGTGGAGCGGCT 91126 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 |||||||| || |||||||| Sbjct 91127 TTCTTTCGTCCTGGGTTACCAC 91148 Score = 107 bits (118), Expect = 2e-18 Identities = 153/211 (73%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 171517 GTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACT 171576 ||| || ||||| |||| || || || | ||| ||||| |||| | || || ||| | Sbjct 88181 GTCAGTCACAGTTCCCAGGTACAAAACCTGGCAGATCACTTCCT---TCCCAACCTGATT 88237 Query 171577 TTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATG-TAGA- 171634 || || ||||| || | || ||||| || ||||||||||||||||| ||| ||| Sbjct 88238 CTTGGGGTCTTTAACCCGGAGGATGCTGGTGACAGATGTAGTCCCGTTTGAATGGTAGTG 88297 Query 171635 ACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCT 171694 || | | ||||||||| || ||||| || || | | ||||| | || |||| ||| Sbjct 88298 AC--TCTCAGTACTATTCTCAATTCCTGACCCAGTGCCCTTCCAGGAGATGGCAGGGGCT 88355 Query 171695 GGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 || | ||||| ||||||||||| ||||||| Sbjct 88356 GGACGGGCAGTCGCAGAGCAAGTGATGTTTA 88386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577934599092800