Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq5258 95.1 3e-14 seq806 95.1 3e-14 seq4084 86.0 1e-11 seq1743 86.0 1e-11 seq1493 86.0 1e-11 seq1044 86.0 1e-11 seq470 84.2 5e-11 >seq5258 Length=100039 Score = 95.1 bits (104), Expect = 3e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || |||||||| ||||| ||||| |||||||| || || | || ||||||| |||||| Sbjct 770 CGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 829 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 | |||||||||||||||||||| || ||||| || Sbjct 830 CGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAG 864 >seq806 Length=630265 Score = 95.1 bits (104), Expect = 3e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || |||||||| ||||| ||||| || ||||| ||||| | || ||||||| |||||| Sbjct 94752 CGGAGTCTCAACACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTA 94811 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 | |||||||||||||||||||| || ||||| || Sbjct 94812 CGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAG 94846 >seq4084 Length=139134 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || |||||||| ||||| ||||| | ||||| ||||| | || ||||||| |||||| Sbjct 21893 CGGAGTCTCAACACAAGATGAAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTA 21952 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 | |||||||||||||||||||| || |||| || Sbjct 21953 CGGCCATCTTCCAGCTGCTTTCCAGCAGAGATCAG 21987 >seq1743 Length=339712 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || |||||||| ||||| ||||| |||||||| || || | || ||||||| |||||| Sbjct 2363 CGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 2304 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 |||||||| ||||||||||| || ||||| || Sbjct 2303 TGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAG 2269 >seq1493 Length=385146 Score = 86.0 bits (94), Expect = 1e-11 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||| | ||||| || ||||| || | | |||||||||| |||||| Sbjct 338954 CGAAGTCTCAACACAGGTTGAAGGGTGGACTCCTTTAGAATGTTATAGTCAGACAAAGTA 338895 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||||||||||||||| || || | ||| |||| Sbjct 338894 TGTCCATCTTCCAGCTGCTTACCAGCAAGGATGAGCC 338858 >seq1044 Length=525964 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || |||||||| ||||| ||||| || ||||| || || | || ||||||| |||||| Sbjct 400044 CGGAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 399985 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 | ||||||||||||||||| || || ||||| || Sbjct 399984 CGGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAG 399950 >seq470 Length=855345 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 |||||||||| ||||| ||||| || ||||| | || | || ||||||| |||||| | Sbjct 695601 GAAGTCTCAACACAAGATGAAGGGTGGACTCCCTTTGAATGTTGTAGTCAGACAAAGTAC 695660 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||||||||| || | ||||| |||| || ||| Sbjct 695661 GACCATCTTCCAGCTGCTTACCAGGAAAGATCAGCCTCTGCTGA 695704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180779130959353