Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq4844 192 7e-44 seq276 127 2e-24 seq3821 120 4e-22 seq24 91.5 2e-13 seq4189 89.7 6e-13 >seq4844 Length=112033 Score = 192 bits (212), Expect = 7e-44 Identities = 234/319 (73%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||| |||||||| || || || ||| |||| | || ||| | ||| || ||| Sbjct 91148 GTGGTAACCCAGGACGAAAGAAAGCCGCTCCACACATCTGCATCCTTACGATGTTCTCTG 91089 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 | || |||||||| ||||||| || |||||||| | || || | |||||| Sbjct 91088 AAAACATCTCAGGAACCCTTGATTGTGACATGGCAGAAGAAGAAAGCCGTGAGCCCAGAG 91029 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| |||| |||||| ||| ||||| ||||||||||| || |||| |||| Sbjct 91028 AACATGATCACTTACAGCAAAACCCATGGGGTTGTGGTCCAGCCTGCCTATAGAGACAGA 90969 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||| || |||| |||||| ||| | | |||||| || ||||| ||||| | Sbjct 90968 GTAAACATTACTGAGCTGGGACTCTGGAACACGAGCATCACCTTCTGGAACACCACAGTG 90909 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || ||||| ||||||| || ||||| || |||||||| |||||||| ||||||| Sbjct 90908 GATGATGAGGGCTGCTACATGTGTCTCTTCAATACCTTTGGTTCTGGGAAGGTCTCGGGA 90849 Query 171372 GTGGCCTGCCTCACCCTCT 171390 || ||||||||||||| Sbjct 90848 ACAGCTTGCCTCACCCTCT 90830 Score = 163 bits (180), Expect = 3e-35 Identities = 188/253 (74%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || ||||||| || | || || || || | |||||| |||||||| |||||||| || Sbjct 88432 GTACAGCCCATAGTATCCCTTCACTACAACTATTTTGAAGACCACCTAAACATCACTTGC 88373 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||| | |||||| || | ||| || | |||||| | ||||||| |||||| Sbjct 88372 TCTGCGACTGCCCGTCCAGCCCCTGCCATCTCCTGGAAGGGCACTGGGTCAGGAATTGAG 88313 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 || |||| ||| || | |||||| || || ||||| ||||| ||||| | |||| Sbjct 88312 AATAGTACTGAGAGTCACTACCATTCAAACGGGACTACATCTGTCACCAGCATCCTCCGG 88253 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 |||||||||||||||| |||| | || ||||| || |||||||| || | | |||||||| Sbjct 88252 GTTAAAGACCCCAAGAATCAGGTTGGGAAGGAAGTGATCTGCCAGGTTTTGTACCTGGGA 88193 Query 171633 AATGTAACTAACT 171645 | ||| ||| ||| Sbjct 88192 ACTGTGACTGACT 88180 >seq276 Length=1137301 Score = 127 bits (140), Expect = 2e-24 Identities = 127/167 (76%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 ||||||||||||||||||| ||||| ||||| ||||| ||||||||| ||| || |||| Sbjct 583059 AGGGTTACTTGGGTTGCCAAGCCTTATCAGAAATGATCCAGTTTTACCTGGTAGAAGTGA 583000 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| ||| ||||| || || |||||| | | |||| Sbjct 582999 TGCCCCAGGCAGAGAACCAC------------GGCCCAGAAATCAAGGAGAACTTGAACT 582952 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | ||||| || ||| | |||||||| ||| || ||||||||| ||| Sbjct 582951 CCCTGGGAGAGAAGTTGAAGACCCTCAGAATGCAGCTGCGGCGCTGT 582905 >seq3821 Length=151595 Score = 120 bits (132), Expect = 4e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 ||| | || | ||| || | ||||||||||||||| | |||||||| || |||||||| Sbjct 45566 AGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATATTGAAGGGC 45507 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCC 147105 || || || ||||| || || ||||||||||| |||||||| || ||||| || | || Sbjct 45506 ACGCCTAGACCCATATCACCTGACCTCTGGTAAAGCTGGCAAGACAGCTCTCCATTCACC 45447 Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 || || ||||| || ||| || || || ||||| ||||| Sbjct 45446 ACATAGAACTGACAGAGGGCATGACAGGGAGGCAGTGCCAT 45406 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 || ||||| |||||||||||||| || || ||||| |||||||| || || || | Sbjct 43978 GCTCCAAAATGCCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGTCGGGCA 43919 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||| ||| | | ||||| || ||||||| | ||| |||||||| | ||||||| Sbjct 43918 GAGAATCCCAGGCTGTCCAGAAAGTCTCGGGACCCATTGGCATCCCAGATTCTCACTCCC 43859 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| ||| || || |||| | ||||| ||| Sbjct 43858 TTGGAGGACAGTTCTTTAGCATTTGTGGATCCC 43826 >seq24 Length=2736093 Score = 91.5 bits (100), Expect = 2e-13 Identities = 132/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 146877 GAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCA-GCTGAATTTTCAGGGGCTCCACGTGGT 146935 |||||| |||||||||| | ||| || | || |||||||||| ||||| | | | Sbjct 845648 GAGCTTTGGGAAGGGTCTTAG-TTCTTGCTGAAGCCGAATTTTCAGTGGCTCGAAACGAT 845590 Query 146936 TGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCA 146995 | ||||| || || || || |||| || || ||||| | || |||| ||| | | Sbjct 845589 TCAGGTAAACATGTGCATCTCCCAAAGTATGGACAAAATGGCCTGGCTGCAGGTTCATAA 845530 Query 146996 CGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGC 147055 ||| || ||||||||||||||| ||||||||| | ||||||||| | ||||| | Sbjct 845529 TGTGTGCAGTCATGTAGGTGAGCAGGTCGTAGCTGGCCACGTTGAAGGGCAAGCCCAGAC 845470 Query 147056 CCAT 147059 |||| Sbjct 845469 CCAT 845466 >seq4189 Length=135085 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| |||||||| | |||| || | ||||||| |||| | | |||||||| Sbjct 5471 TACTCACTGGTGTTCATCATTGGCCTCCTGGGCAATGTGGTGGTTGTGTTGATCCTCATA 5530 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 ||||| | || ||| || ||||| || |||| |||| ||||| |||| || |||| Sbjct 5531 AAGTATAGGAAGCTACAAATTATGACTAATATCTACCTGCTCAACTTGGCAATTTCTGAC 5590 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||||| | | |||||| |||| || |||||||||| Sbjct 5591 CTGCTTTTTCTCTTCACCATCCCATTCTGGATTCACT 5627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582986251375200