Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq385 192 8e-43 seq818 176 6e-38 SEQ68729 172 8e-37 seq1391 158 2e-32 seq463 156 6e-32 SEQ14915 113 6e-19 seq1289 91.5 2e-12 >seq385 Length=970056 Score = 192 bits (212), Expect = 8e-43 Identities = 182/231 (79%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||||||||| || || |||| || |||| ||| Sbjct 349173 TCTACAAGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAGGCCA 349120 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || |||||||||||||| ||||||||||| |||| ||||||| || ||||||| | Sbjct 349119 TGGGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCAGCGAGGCCTCCC 349060 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| || |||||||||| || ||| | |||||| | ||||| ||||||| Sbjct 349059 GCCTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGCGAGGTGCAGACGGCCGTGC 349000 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 348999 GCCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 348949 Score = 188 bits (208), Expect = 1e-41 Identities = 181/231 (78%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||||||||| || || |||| || |||| ||| Sbjct 344596 TCTACAAGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAGGCCA 344649 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || |||||||||||||| ||||||||||| |||| ||||||| || ||||||| | Sbjct 344650 TGGGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCAGCGAGGCCTCCC 344709 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| || |||||||||| || ||| | |||||| | ||||| ||||||| Sbjct 344710 GCCTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGCGAGGTGCAGACGGCCGTGC 344769 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| |||||| ||||||| ||||||||| || |||||||||| Sbjct 344770 GCCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 344820 Score = 107 bits (118), Expect = 3e-17 Identities = 106/136 (78%), Gaps = 6/136 (4%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||||||||| || || |||| || |||| ||| Sbjct 344396 TCTACAAGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAGGCCA 344449 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || |||||||||||||| ||||||||||| |||| ||||||| || ||||||| | Sbjct 344450 TGGGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCAGCGAGGCCTCCC 344509 Query 725032 GCCTGGCGCGCTCCAA 725047 ||||||||| || ||| Sbjct 344510 GCCTGGCGCACTACAA 344525 Score = 107 bits (118), Expect = 3e-17 Identities = 106/136 (78%), Gaps = 6/136 (4%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||||||||| || || |||| || |||| ||| Sbjct 349748 TCTACAAGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAGGCCA 349695 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || |||||||||||||| ||||||||||| |||| ||||||| || ||||||| | Sbjct 349694 TGGGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCAGCGAGGCCTCCC 349635 Query 725032 GCCTGGCGCGCTCCAA 725047 ||||||||| || ||| Sbjct 349634 GCCTGGCGCACTACAA 349619 >seq818 Length=626890 Score = 176 bits (194), Expect = 6e-38 Identities = 177/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 43688 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 43635 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| |||||| ||| Sbjct 43634 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGC 43575 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 |||||| || |||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 43574 TTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 43515 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 43514 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 43466 >SEQ68729 Length=1002 Score = 172 bits (190), Expect = 8e-37 Identities = 178/232 (77%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| |||||||||||||| |||| |||| ||| ||| || Sbjct 724 ATCTACAAGGTGCTGAAGCAGGTGCACCCGGACACCGG-----CATC-TCCTCTAAGGCC 777 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || || | |||||| |||| ||||||| |||||| Sbjct 778 ATGAGCATCATGAACTCCTTCGTGACCGACATCTTCGAGCGCATCGCGGGCGAGGCGTCG 837 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| || |||||||||| || ||| |||| ||||||||||| |||||| Sbjct 838 CGCCTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTG 897 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 898 CGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 949 >seq1391 Length=410803 Score = 158 bits (174), Expect = 2e-32 Identities = 141/177 (80%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 724966 AGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGG 725025 || ||||| |||||||||||||| ||||||||||| |||| ||||||| ||||| Sbjct 307435 AGGCCATGGGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGG 307376 Query 725026 CCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCG 725085 | |||||||||| || |||||||||| || ||| |||| ||||||||||| | Sbjct 307375 CGTCGCGCCTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGG 307316 Query 725086 CCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||||||||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 307315 CCGTGCGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 307259 Score = 114 bits (126), Expect = 2e-19 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 725010 CGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG 725069 ||||||| |||||| |||||||||| || |||||||||| || ||| || Sbjct 127664 CGCATCGCGGGCGAGGCGTCGCGCCTGGCGCACTACAACAAGCGCTCGACCATCACGTCG 127605 Query 725070 CGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTC 725129 || ||||||||||| |||||||||||| | ||| ||| || ||||||| ||||||||| Sbjct 127604 CGGGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTG 127545 Query 725130 TCCGAGGGCACCA 725142 ||||||||||||| Sbjct 127544 TCCGAGGGCACCA 127532 Score = 113 bits (124), Expect = 6e-19 Identities = 92/112 (82%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| || |||||||||| || ||| |||| ||||||||||| |||||| Sbjct 120374 CGCCTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTG 120315 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 120314 CGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 120263 Score = 113 bits (124), Expect = 6e-19 Identities = 92/112 (82%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| || |||||||||| || ||| |||| ||||||||||| |||||| Sbjct 328865 CGCCTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTG 328924 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 328925 CGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 328976 >seq463 Length=870752 Score = 156 bits (172), Expect = 6e-32 Identities = 134/166 (81%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 724977 ATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTG 725036 |||||||||||||| ||||||||||| |||| ||||||| |||||| |||||| Sbjct 204725 ATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGCCTG 204666 Query 725037 GCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTG 725096 |||| || |||||||||| || ||| |||| ||||||||||| |||||||||||| Sbjct 204665 GCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGCCTG 204606 Query 725097 ATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 204605 CTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 204560 Score = 156 bits (172), Expect = 6e-32 Identities = 134/166 (81%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 724977 ATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTG 725036 |||||||||||||| ||||||||||| |||| ||||||| |||||| |||||| Sbjct 283409 ATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGCCTG 283468 Query 725037 GCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTG 725096 |||| || |||||||||| || ||| |||| ||||||||||| |||||||||||| Sbjct 283469 GCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGCCTG 283528 Query 725097 ATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 283529 CTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 283574 Score = 114 bits (126), Expect = 2e-19 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 725010 CGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG 725069 ||||||| |||||| |||||||||| || |||||||||| || ||| || Sbjct 157647 CGCATCGCGGGCGAGGCGTCGCGCCTGGCGCACTACAACAAGCGCTCGACCATCACGTCG 157588 Query 725070 CGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTC 725129 || ||||||||||| |||||||||||| | ||| ||| || ||||||| ||||||||| Sbjct 157587 CGGGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTG 157528 Query 725130 TCCGAGGGCACCA 725142 ||||||||||||| Sbjct 157527 TCCGAGGGCACCA 157515 Score = 113 bits (124), Expect = 6e-19 Identities = 92/112 (82%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| || |||||||||| || ||| |||| ||||||||||| |||||| Sbjct 337248 CGCCTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTG 337307 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 337308 CGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 337359 Score = 109 bits (120), Expect = 8e-18 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 725010 CGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG 725069 ||||||| |||||| |||||||||| || |||||||||| || ||| || Sbjct 193144 CGCATCGCGGGCGAGGCGTCGCGCCTGGCGCACTACAACAAGCGCTCGACCATCACGTCG 193203 Query 725070 CGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTC 725129 || ||||||||||| |||||||||||| | ||| ||| || ||||||| ||||||||| Sbjct 193204 CGGGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTG 193263 Query 725130 TCCGAGGGCACCA 725142 || |||||||||| Sbjct 193264 TCGGAGGGCACCA 193276 >SEQ14915 Length=11847 Score = 113 bits (124), Expect = 6e-19 Identities = 92/112 (82%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| || |||||||||| || ||| |||| ||||||||||| |||||| Sbjct 4439 CGCCTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTG 4380 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 4379 CGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 4328 >seq1289 Length=437052 Score = 91.5 bits (100), Expect = 2e-12 Identities = 154/220 (70%), Gaps = 10/220 (5%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||||| | ||||||||||||| || | |||| || |||| || Sbjct 3387 TACAAAGTGCTGAGGCAGGTGCACCCCGACACAGG-----CATC-TCGTCCAAGCTCACA 3334 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC-- 725031 ||||||||||| |||||||||||||| | || ||||||| |||||| ||| Sbjct 3333 GGCATCATGAACTCCTTTGTCAACGACATTTTGGAGCGCATCGTGGGCGAGGC--GTCAT 3276 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| || |||||||| || ||| |||| || ||||||| || |||| Sbjct 3275 GCCTGGCGCCCTACAACAAGCATTCTACTATCACTTCGCGGGATATCCAGATGGCGGTGC 3216 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTC 725131 || || | ||| | | |||||| ||| |||| | || || Sbjct 3215 GCTTGCTGCTGCCCAGAGAACTGACCAAGCACCCTGTGTC 3176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7171175988708466