Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq5258 134 1e-26 seq584 129 5e-25 seq1743 122 8e-23 seq245 120 3e-22 seq1044 116 3e-21 seq806 113 4e-20 seq186 113 4e-20 seq470 98.7 9e-16 seq1868 96.9 3e-15 seq4084 95.1 1e-14 SEQ11613 91.5 1e-13 seq2265 87.8 2e-12 SEQ15051 82.4 7e-11 >seq5258 Length=100039 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | ||| |||||||||||||||||| || | | Sbjct 764 CCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAC 823 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||||||||| || ||||| |||| | |||||| || | |||| Sbjct 824 AAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 883 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | ||||| | ||| ||| Sbjct 884 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 943 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || ||||||| || |||||||| |||||||| Sbjct 944 TCGAGCGTGACGGTCTTTCCCGTCAGGGTCTTCACAAAGATCTGCAT 990 >seq584 Length=770825 Score = 129 bits (142), Expect = 5e-25 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 35549 TTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATC 35608 || || |||||||| |||| || ||| || | || ||||||||||| |||||||| ||| Sbjct 448349 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATC 448408 Query 35609 AACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC 35668 | || ||||||||| | || | || ||||||||| ||||||| ||| | | | | Sbjct 448409 AGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCA 448468 Query 35669 ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAAT 35728 | ||||| || | || ||||| | ||||| |||||||| || || |||||||| || Sbjct 448469 ATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTTTTACCAGTTAAGGTTTTCACGAAG 448528 Query 35729 ATCTGCATT 35737 ||||||||| Sbjct 448529 ATCTGCATT 448537 >seq1743 Length=339712 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | ||| |||||||||||||||||| || | | Sbjct 2369 CCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAC 2310 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || | | || || |||||||| || ||||| |||| | |||||| || | |||| Sbjct 2309 AAAGTATGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 2250 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | ||||| | ||| ||| Sbjct 2249 ATTCCTTCCTTATCCTGGATCTTGGCCTTTATATTTTCTATAGTGTCCGAGGGTTCAACC 2190 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | |||||| || || | |||| || |||||||| |||||||| Sbjct 2189 TCGAGCGTGATGGTCTTCCTGGTCAGGGTCTTCACAAAAATCTGCAT 2143 >seq245 Length=1203420 Score = 120 bits (132), Expect = 3e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | ||| || | || ||||||||||| || ||||| Sbjct 1816 CTCCTTCTGGATGTTGTAATCAGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 1875 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||||| || | || ||||||||| |||||| ||||| | Sbjct 1876 GATGAGCCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 1935 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || ||||||| || ||||| Sbjct 1936 CTCAATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 1995 Query 35725 AAATATCTGCATTCTG 35740 || || |||||| || Sbjct 1996 GAAGATTTGCATTTTG 2011 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 35549 TTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATC 35608 || || |||||||| |||| || ||| || | || ||||||||||| || ||||| ||| Sbjct 1592 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATC 1651 Query 35609 AACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC 35668 | || ||||||||| | |||| | ||||||||| |||||| ||||| | | Sbjct 1652 AGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCA 1711 Query 35669 ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAAT 35728 | ||||| || | || ||||||| ||||| || || || |||| || ||||| || Sbjct 1712 ATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAG 1771 Query 35729 ATCTGCAT 35736 |||||||| Sbjct 1772 ATCTGCAT 1779 >seq1044 Length=525964 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | || |||||||||||||||||| || | | Sbjct 400050 CCACCACGGAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGAC 399991 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||||||||| || ||||| |||| | |||||| || | |||| Sbjct 399990 AAAGTACGGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 399931 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| | | |||||| ||| | | || | | ||||| | | ||| || Sbjct 399930 ATCCCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATTGTGTCCCAGGGTTCAGCC 399871 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | | ||||| || || || || | ||||||||||| |||||||| Sbjct 399870 TTGAGTGTGATGGTCTTCCCTGTAAGGGTTTTCACAAAAATCTGCAT 399824 >seq806 Length=630265 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | || |||||| ||||||||||| || | | Sbjct 94746 CCACCACGGAGTCTCAACACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAC 94805 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||||||||| || ||||| |||| | |||||| || | |||| Sbjct 94806 AAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 94865 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | ||||| | ||| || Sbjct 94866 ATTCCTTCCTTATCCTGGATCTTGGCCTTAACATTTTCTATAGTGTCTGAGGGTTCAGCC 94925 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | | | |||| || || ||||| | || |||||||| |||||||| Sbjct 94926 TTGAGCATGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 94972 >seq186 Length=1368741 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | | |||||| ||||||||||| || | | Sbjct 837453 CCACCACGGAGTCTCAACACAAGATGAAGGGAGGACTCCTTCTGAATGTTGTAGTCAGAC 837394 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||||||||| | ||| | |||| | |||||| || | |||| Sbjct 837393 AAAGTACGGCCATCTTCCAGCTGCTTTTCAGCAGAGATCAGTCTCTGCTGATCAGGAGGA 837334 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | ||||| ||||| || Sbjct 837333 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAGCC 837274 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | |||||| || || ||||| | || |||||||| |||||||| Sbjct 837273 TCGAGCGTGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 837227 >seq470 Length=855345 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||| | | |||||||| | ||| | || |||| ||||||||||||| || | | Sbjct 695594 CCACCATGAAGTCTCAACACAAGATGAAGGGTGGACTCCCTTTGAATGTTGTAGTCAGAC 695653 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||||||||||||| | ||| |||| || |||||| || | |||| Sbjct 695654 AAAGTACGACCATCTTCCAGCTGCTTACCAGGAAAGATCAGCCTCTGCTGATCAGGAGGA 695713 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| | | | ||| | | || | | ||||| || ||| ||| Sbjct 695714 ATTCCTTCCTTATCCTGAAGCCTGGACTTGACATTTTCTATAGTGTCCAACGGTTCAACC 695773 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || || || ||||| | || |||||||| |||||||| Sbjct 695774 TCGGGCTCAATGGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCAT 695820 >seq1868 Length=317776 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/194 (72%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || |||||||||||||| || | ||| || || | || ||||||||||| || ||||| Sbjct 104837 TCGTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTCCCAGCAAAG 104896 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT-TTG--CTTCAGA 35662 |||| | |||||| || | ||||| | | ||| ||| |||||| ||| ||| | | Sbjct 104897 ATCAGTCTCTGCTGATCAGGAGGAATTCCTTACTTATCCTGGATCTTGTTGGCCTTTACA 104956 Query 35663 GTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 || | | || || | ||| ||||| | |||||| || || ||||| | || ||| Sbjct 104957 TTTTCTATAGTCTCTGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGTAAGGGTCTTC 105016 Query 35723 ACAAATATCTGCAT 35736 ||||| || ||||| Sbjct 105017 ACAAAAATATGCAT 105030 >seq4084 Length=139134 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/232 (69%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | | |||||| ||||||||||| || | | Sbjct 21887 CCACCACGGAGTCTCAACACAAGATGAAGGGAGGACTCCTTCTGAATGTTGTAGTCAGAC 21946 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||||||||| || ||| | |||| | |||||| || | ||| Sbjct 21947 AAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGGC 22006 Query 35630 A--CGCTCT---CCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATT 35684 | | ||| ||| ||| |||||| ||| | | || | | ||||| | || Sbjct 22007 ATTCCTTCTGGATCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTT 22066 Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | ||||| | |||||| || || ||| | | || |||||||| |||||||| Sbjct 22067 CAACCTCGAGCGTGATGGTCTTCCCCTTAAGGGTCTTCACAAAAATCTGCAT 22118 >SEQ11613 Length=25137 Score = 91.5 bits (100), Expect = 1e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 35559 TGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCT 35618 |||| || | ||| || || | || ||||||||||| || ||||| |||| | ||||| Sbjct 17202 TGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCT 17261 Query 35619 GGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGC 35678 | || | ||||| | ||||| ||| |||||| ||| | | || | | ||||| Sbjct 17262 GATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCG 17321 Query 35679 TCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | ||| ||||| | ||||| || || ||||||| || |||||||| |||||||| Sbjct 17322 AGGGTTCAACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAGATCTGCAT 17379 >seq2265 Length=264906 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 35544 TCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAA 35603 |||| || || || ||||| |||| | ||| || | || ||||||||||| || || | Sbjct 262284 TCTCTTTCTGGATATTGTAGTCGGACTGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGA 262343 Query 35604 ATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAG 35663 |||||| || ||||||||| | || | || |||||||| ||||||| ||| | | Sbjct 262344 ATATCAGCCTCTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTTGATCTTGGCCTTGACAT 262403 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAA 35716 | | | ||||| || | ||| |||| | ||||| | || ||||||||| Sbjct 262404 TCTCGATGGTGTCACTGGGTTCGTCCTCAAGAGTGATGCTCTTGCCCGTCAAA 262456 >SEQ15051 Length=11622 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 35503 TTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTA 35562 ||| || |||||| | |||||||| | ||| | || || | ||||||||||||| Sbjct 5715 TTTCTTAGCACCACAAAGTCTCAACACAAGATGAAGGGTGGACTTCCTTTGAATGTTGTA 5656 Query 35563 ATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 || | ||| || || | |||||||||||||| ||||| | || || |||||| || Sbjct 5655 GTCAGACAAAGTACGGCGATATTCCAGCTGCTTACCAGCAAAAAACAGCCCCTGCTGATC 5596 Query 35623 CGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 | ||||| | ||||| ||| ||||||| Sbjct 5595 AGGAGGAATTCCTTCCTTATCCTTGATCTT 5566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450405956948440