Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6788 114 2e-20 seq847 107 3e-18 seq525 91.5 2e-13 seq41 84.2 3e-11 >seq6788 Length=68851 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || ||||| |||||||| || |||||| || | || || || ||||| || | Sbjct 43241 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCGTAGTTAGGCTCAGCAATATGTATGT 43300 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || || ||||||||||||||||| ||||| || || ||||| || | || | ||| Sbjct 43301 TTAGAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTCT 43360 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | |||| |||||||| | ||||||| | | ||| || | ||||| |||| Sbjct 43361 TCTGAGAGATTTCCCACACAGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 43411 Score = 114 bits (126), Expect = 2e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || ||||| || || || ||||| |||||||| || ||||| || || ||||| | ||| Sbjct 46068 TGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTAGTGTAAGGTTCAATGGAT 46127 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| ||||| || ||||||||||| ||||| ||||| || || | | |||||| Sbjct 46128 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 46187 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 46188 TTTCTTATACCAT 46200 Score = 114 bits (126), Expect = 2e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 68946 TGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAA 69005 |||||| | |||||||||||| || || | || | || || ||||| ||||| || | Sbjct 49100 TGATCCCTCATATGTTTCATAGGGGCCATACTCCTTGGCGAGGTCACAGCTTGCTTCCAG 49159 Query 69006 TGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATC 69065 || ||||||||||| ||||| || |||| |||||| || || |||||| | || || Sbjct 49160 GGCTCCGTAATAAATAGTTTCAAAGATCTGCTTATTCAGCAACTGGGCTTCTGGGCTCTC 49219 Query 69066 GAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGG 69125 || ||||| | | ||| || |||||||| | || || |||||||| || ||||| Sbjct 49220 AAAGGGATACCTCATCAAAATGAAAGCATCTGCTAGGCCTTGTACCCCAATTCCAATAGG 49279 Query 69126 TCTATGTCTCTTATTTGA 69143 | ||| | |||||||| Sbjct 49280 CCGATGGCGTTTATTTGA 49297 >seq847 Length=614715 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 ||||| || || || | || || ||||| || ||||||||||| || || | ||| || Sbjct 68526 TCATCCCTGCTGATCAGCTCATTTGAAAAGGTAAGTCCAGGCATGAGGCCTCTCTTCTTT 68585 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||| |||||||| ||||| || |||||||| || ||||| || Sbjct 68586 AGCCAGAATATAGCAGCAAACGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 68645 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 68646 ACCACTCTTTCCCC 68659 >seq525 Length=811145 Score = 91.5 bits (100), Expect = 2e-13 Identities = 206/306 (67%), Gaps = 14/306 (5%) Strand=Plus/Plus Query 172165 CTTTTGCTAATACAGAGGGTGGATTTTTGTTCATTGGGCTGGATGGAAATACACGTAAAG 172224 ||||||| || || | || |||| |||||||||||| ||||||| || | || || Sbjct 723556 CTTTTGCAAACACGAAAGGGGGATATTTGTTCATTGGTTTGGATGGGAAGAAACAGCAAA 723615 Query 172225 TAATTGGATTCGATGCTGGACAAGAAT-ATCTCGATAT---TATAGGTCGTGAGATAGAA 172280 ||||||| || || || || |||| | |||| ||| | ||| |||| |||||| Sbjct 723616 TAATTGGTTTTGAAGC-AGAGAAGAGTGATCT---TATGCATCTAGAGAGTGAAATAGAA 723671 Query 172281 AAGCGTGTTAAAAGACTTCATGTTGTGCACTTTTGTGAGAAAAAAGAGGATATCAAATAT 172340 ||| | || | || | ||| ||||| |||||| | || ||| | || || || Sbjct 723672 AAGTGCGTCCGACAGCTGCCTGTCACTCACTTCTGTGAGGAGAAGGAGAACATAAAGTAC 723731 Query 172341 GCATATAGATTCATCAAGGTATATAAACCTGGTGATGAAAATACATCAACATATGTATGT 172400 | | ||||||||| | || | | ||| || | || ||| | ||||| ||| Sbjct 723732 ACGTGCAGATTCATCGAAGTGCACAGACCAGGAGCTG------CATGTTCGTATGTCTGT 723785 Query 172401 GCTATCAAAGTGGAGAGATTTTGTTGTGCCGTGTTCACTGATTATCCTGAATCGTGGTAT 172460 || | | |||||||||||| || ||||| |||||| ||| | || || || ||| || Sbjct 723786 GCGCTGAGAGTGGAGAGATTCTGCTGTGCAGTGTTCGCTGCAGAGCCCGAGTCCTGGCAT 723845 Query 172461 ATAGAA 172466 | ||| Sbjct 723846 GTGGAA 723851 >seq41 Length=2266706 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/139 (74%), Gaps = 5/139 (4%) Strand=Plus/Minus Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG----TGACATAACTCCCATTT 39326 ||| |||||| |||| || | |||| ||| || ||| |||||| || ||||| Sbjct 1101581 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCCG-TTGAACTTGACATCACACCCATCC 1101523 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | ||||| || || || || ||||| || || || || || ||||| | ||| ||||||| Sbjct 1101522 TCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTT 1101463 Query 39387 CCATGAAATCAAACGGATT 39405 ||||||| ||||| ||||| Sbjct 1101462 CCATGAAGTCAAATGGATT 1101444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686318118536520