Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq847 105 5e-18 seq41 105 5e-18 >seq847 Length=614715 Score = 105 bits (116), Expect = 5e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||| || | || || ||||| | ||| ||||| |||||||| || ||||||||||| Sbjct 68659 GGGGAAAGAGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCTGGATCGTTTGCT 68600 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 || ||||| ||| ||||||| |||| | |||||||| | || |||||||||||| | Sbjct 68599 GCTATATTCTGGCTAAAGAAGAGAGGCCTCATGCCTGGACTTACCTTTTCAAATGAGCTG 68540 Query 44243 ATAAGTCGTGATGAAG 44258 || || | ||||||| Sbjct 68539 ATCAGCAGGGATGAAG 68524 Score = 91.5 bits (100), Expect = 1e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 ||||| || || ||||| ||||| ||||||||| ||| || ||| |||| || || ||| Sbjct 72687 CCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAATGTTCACTCAGAGATG 72628 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||||| | ||||||||||| ||||||| |||| Sbjct 72627 TACAGTTTACTGATAGATACTTACATCAGAGAT 72595 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 61652 AAAATCCCTTTGATTTTATGGAAAACATTTCATTAGAAGGGAAAACAAATTTCTTTGAGA 61593 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 || | ||| || ||||||||| | | |||||| Sbjct 61592 AAAGAGTTTCTGAGTATCAGCGATTTGCAGTCATG 61558 >seq41 Length=2266706 Score = 105 bits (116), Expect = 5e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||||||| | |||| || || ||||| ||||| |||||||||||||| ||||| Sbjct 1098730 CAAGAAGTTCAAGTCACAGAGGCCCGTTGTTTCTATGGCTTTCAAATTGCCATGGAAAAC 1098789 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || || || |||||||||||||| || || || || ||||| || ||| Sbjct 1098790 ATACACTCTGAAATGTACAGTCTCCTTATTGACACTTACATTAAGGAT 1098837 Score = 86.0 bits (94), Expect = 5e-12 Identities = 108/148 (73%), Gaps = 3/148 (2%) Strand=Plus/Plus Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548 ||| |||| || ||||| || |||||||||||||| | ||||| || |||||||| ||| Sbjct 1101438 GTAGAAAATCCATTTGACTTCATGGAAAATATTTCACTAGAAGGAAAGACAAACTTCTTT 1101497 Query 44549 GAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAA---CAAGTGACAATAAA 44605 || || || || || || || ||| | ||||| || ||| || ||| || ||| Sbjct 1101498 GAGAAGCGAGTAGGCGAGTACCAGAGGATGGGTGTGATGTCAAGTTCAACGGAGAATTCT 1101557 Query 44606 TTTACTACGGATGAAGATTTCTAATTAA 44633 ||||| ||||| || |||||| ||| Sbjct 1101558 TTTACCTTGGATGCTGACTTCTAAGTAA 1101585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397122767051965