Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5258 100 2e-16 SEQ11613 91.5 1e-13 >seq5258 Length=100039 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094 ||| || | ||| | ||||| || |||||||| |||||||| || | || | || Sbjct 778 CAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 837 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| ||||| || || || | || || | ||| ||||| || || | || || ||||| Sbjct 838 TTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 897 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 ||||||| || | |||||| |||||| | || |||||| || || || | | Sbjct 898 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGACGGT 957 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||||||| || ||||||||||| ||||| Sbjct 958 CTTTCCCGTCAGGGTCTTCACAAAGATCTGCAT 990 >SEQ11613 Length=25137 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | || || | ||| ||||| || || | || || ||| Sbjct 17225 TCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTA 17284 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| || | |||||| |||||| | || |||||| || ||||| || Sbjct 17285 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGAGTGATG 17344 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || |||||||| || ||||||||||| ||||| Sbjct 17345 GTCTTCCCCGTCAGGGTCTTCACAAAGATCTGCAT 17379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424578128757816