Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq41 93.3 5e-14 seq847 89.7 6e-13 >seq41 Length=2266706 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 || |||||| || ||||||||||||||||||||||| || | || ||||||||| Sbjct 1099855 GCCTTTGCAGCGGTAGAAGGAATCTTCTTCTCTGGCTCTTTTGCATCGATATTCTGGCTC 1099914 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||||| || || ||||| ||||| | || ||||| ||||| ||| | | |||||| Sbjct 1099915 AAGAAGCGGGGGCTGATGCCCGGCCTTACGTTTTCCAATGAGCTTATTAGCAGAGACGAG 1099974 Query 60111 G 60111 | Sbjct 1099975 G 1099975 >seq847 Length=614715 Score = 89.7 bits (98), Expect = 6e-13 Identities = 86/108 (80%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| || |||||||| ||||||||||| ||||| |||||| |||||||| Sbjct 68644 GCCTTTGC-TGCTGTAGAAGGAATTTTCTTCTCTGGATCGTTTGCTGCTATATTCTGGCT 68586 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 || ||| | ||||||||||| || || | || || || |||||||| Sbjct 68585 AAAGAAGAGAGGCCTCATGCCTGGACTTACCTTTTCAAATGAGCTGAT 68538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548053116667920