Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq635 95.1 1e-14 seq1066 86.0 7e-12 >seq635 Length=728471 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| || |||||| ||| | || || ||||| Sbjct 521616 GTGAAAATATAACGAGGGCTTGCAGCATCTTTACCACCATGAAGCCTAGTTCCAAATTGA 521675 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | |||||| ||||||||| || |||||||| || ||| Sbjct 521676 CCAATGGGCTGAAGCAAGTTAATGTTGTTACTGCCCACAAAATTCTGAGCCAAATTCACA 521735 Query 117425 ATCGT 117429 || || Sbjct 521736 ATAGT 521740 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| || ||||| |||| |||||||| || Sbjct 521616 GTGAAAATATAACGAGGGCTTGCAGCATCTTTACCACCATGAAGCCTAGTTCCAAATTGA 521675 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || | ||| | |||||| |||||| ||||||||||||||||||||| Sbjct 521676 CCAATGGGCTGAAGCAAGTTAATGTTGTTACTGCCCACAAAATTCTGAGCCAAATTCACA 521735 Query 152149 ATCGT 152153 || || Sbjct 521736 ATAGT 521740 >seq1066 Length=515534 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||||||||| | || || | ||||||||||| ||||| || |||||||| Sbjct 106731 GTAAAGATGTATCGAGGACTAGCTGAGTCCTTGCCACCATGCAGCCTGGTACCAAACTGA 106672 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | |||||| | || ||| ||||| ||||||||||||||||| | | Sbjct 106671 CCAATGGGCTGCAAGAGGTTCAAATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 106612 Query 152149 ATCGT 152153 || || Sbjct 106611 ATGGT 106607 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || || ||||| |||| || || | |||||||||||| || | ||||| || || Sbjct 106731 GTAAAGATGTATCGAGGACTAGCTGAGTCCTTGCCACCATGCAGCCTGGTACCAAACTGA 106672 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| ||||||||||| || ||| |||||||| || |||||||| |||| | Sbjct 106671 CCAATGGGCTGCAAGAGGTTCAAATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 106612 Query 117425 ATCGT 117429 || || Sbjct 106611 ATGGT 106607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546745442121400