Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq951 149 8e-31 >seq951 Length=571742 Score = 149 bits (164), Expect = 8e-31 Identities = 606/940 (64%), Gaps = 29/940 (3%) Strand=Plus/Minus Query 13659 TATCTCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTG 13718 ||| | ||| |||||| || ||||||| | ||||| || || || || |||||| Sbjct 400687 TATATTGTGGAGCCCCTTAGTAAAGAAGAGGCAGGCTTTCCAATTGCATATTCCATCGTG 400628 Query 13719 ATCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAAC 13778 | ||||| ||||| || ||| | || | |||||||||||||||||| || ||||| Sbjct 400627 GTTCACCATAAGATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTACATGCCCCAGAAT 400568 Query 13779 CTCTACTGCGTCCACGTGGACTCCAAGTCCGGCGA--CGAGTTCATCCGGGGCGTCTCGG 13836 |||||||| |||| |||||| || | | || | || | || | || ||| Sbjct 400567 TTCTACTGCATCCATGTGGACAAGAAAGCAGAGGAATCCTTTTTAGCC--GCAGTGGCGG 400510 Query 13837 CCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACG 13896 ||| || |||||| ||| || ||||| || | || | | || || || | Sbjct 400509 GCATTGCGTCCTGCTTCGATAATGTCTTTGTGGCCAGCCAGTTGGAGAATGTTGTTTATG 400450 Query 13897 GCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCG 13956 |||||||||||| || ||||||||||||| ||||||| ||||||| || | Sbjct 400449 CCTCCTGGAGTCGGGTTCAGGCCGACCTCAACTGCATGAAGGACCTGTACAGAATGAATG 400390 Query 13957 TCAAGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGG 14016 || |||| |||| || | || || || || ||||| ||||| | || |||||||||| Sbjct 400389 CAAACTGGAAGTACTTGATTAATCTCTGTGGTATGGATTTCCCTATTAAAACCAACCTGG 400330 Query 14017 AGATCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGC 14076 | || || || ||| ||| | | || | ||| |||||| | ||| |||| Sbjct 400329 AAATTGTCAGGAAGCTCAAGTCGTTCATAGGTGAAAACAACCTGGAAACTGAGAAGATGC 400270 Query 14077 CCAACCACAAGCTGCACCGCATCAGGAAGAGGCA---CGTGGTGGCCAGCGGCGGCGTGG 14133 | | ||||| | | | ||| |||| | | || | | || || Sbjct 400269 CTCCCAACAAGGAAGAAAGATGGAAAAAGCGGCACACCATTGTTG--ATGGGAAGC---- 400216 Query 14134 TGGTCAACACCGGCAGGAA--CAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGG 14191 || ||||| || || | ||| || | ||| || |||| | || | ||| | || Sbjct 400215 TGACTAACACTGG--GGTAGCCAAAGCGCAGCCTCCACTCAAAACTCCTCTTTTTTCAGG 400158 Query 14192 AAACGCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGT 14251 | ||| ||||||| ||||| |||| | || | | || || | | || | Sbjct 400157 CAGCGCCTACTTTGTGGTCAGTAGGGAATATGTAGGCCATGTGCTAGAAAATGAAAATAT 400098 Query 14252 GGCCCTGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCAC 14311 | ||||| | ||| ||||||| |||||||| |||||| ||| |||||||| Sbjct 400097 CCAAAAGTTCATGGAATGGGCGCAGGACACATACAGCCCAGACGAGTTCCTTTGGGCCAC 400038 Query 14312 CGTGCAGAGAATGTACGGGACGCCCGGGGGGATC-CCCGTTCA-CGTCAAGTACGACACC 14369 | ||| | | | | || | || || || ||| | || | ||||| ||| Sbjct 400037 TATCCAGCGGA--TCCCTGAAGTCCCTGGTTCTCGCCCCTCCAGCAATAAGTATGACTTG 399980 Query 14370 TCGGACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGA--TATCA 14427 || |||||| |||| | ||||| ||||||||||| |||| ||| || || | || Sbjct 399979 TCTGACATGAATGCCATCGCGAGGTTTGTCAAGTGGCAGTACTTCGAAGGCGACGTTTCC 399920 Query 14428 AGAAAGGGGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCG 14487 || ||| || | ||||| || ||| | || | ||||| | | || | ||| |||||| Sbjct 399919 AG--AGGCGCTCCTTACCCCCCGTGCAATGGAGTGCACGTGCGCTCCGTGTGCGTCTTCG 399862 Query 14488 GGTCCGGCGACGTGAAGTGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACG 14547 | | || ||| ||| ||| || | || | ||||| || ||||||||||||||| Sbjct 399861 GAGCGGGGGACTTGAGATGGATGCTGCGCAAGCACCACCTTTTTGCCAACAAGTTCGAC- 399803 Query 14548 ACGAGACG--GACGAGTTCGCCGTGCGCTGTCTGGACGAG 14585 | | |||| ||| |||||| | | |||||||| ||| Sbjct 399802 ATG-GACGTCGACCCCTTCGCCATCCAGTGTCTGGATGAG 399764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172741927680