Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq3821 125 6e-24 seq24 104 2e-17 seq119 91.5 1e-13 >seq3821 Length=151595 Score = 125 bits (138), Expect = 6e-24 Identities = 123/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 29948 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 30007 |||| ||| || |||||||| ||||| || | ||||||||||| || ||||| || || Sbjct 45560 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATATTGAAGGGCACGCCT 45501 Query 30008 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAA 30067 || ||||| || || ||||||||||| ||||| || || |||||||| | ||| || Sbjct 45500 AGACCCATATCACCTGACCTCTGGTAAAGCTGGCAAGACAGCTCTCCATTCACCACATAG 45441 Query 30068 AACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106 |||||||| | ||| || || ||||| || ||||| ||| Sbjct 45440 AACTGACAGAGGGCATGACAGGGAGGCAGTGCCATCAGG 45402 Score = 100 bits (110), Expect = 2e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| |||||||| ||||||||||||||||| || || || || |||||||| Sbjct 43994 CATATCTTTGTAGTCTGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGGCCCAGGTC 43935 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || || | | | ||| ||| |||||| |||||||| ||| || ||||| || Sbjct 43934 CCCTTCCTGTCGGGCAGAGAATCCCAGGCTGTCCAGAAAGTCTCGGGACCCATTGGCATC 43875 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||| | || ||||| || || ||||| | |||||||| || Sbjct 43874 CCAGATTCTCACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGGATCC 43827 >seq24 Length=2736093 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 11/214 (5%) Strand=Plus/Plus Query 29961 TCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCC 30020 ||||||| ||||| || | |||||||| ||||||||||| || || || ||| Sbjct 845270 TCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTAAAGGGCACACC-AGACCCT------ 845322 Query 30021 CCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGG 30080 ||||||||||| ||||| || || | |||||| | ||| || |||| ||| | | Sbjct 845323 --GACCTCTGGTAAAGCTG-CAAGACACCTCTCCATTCACCACATAGAACTCACAGAGAG 845379 Query 30081 CGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30140 | ||||| |||| || ||||| ||| | ||||| ||||||||||| ||| ||||| Sbjct 845380 CATGGCAATGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACGTGATGA 845439 Query 30141 TGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTC 30174 | | ||||| || | ||| | ||||| |||| Sbjct 845440 TTCTTCTGTCATCAAGATTGGTTTTGATG-GGTC 845472 >seq119 Length=1622055 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 229347 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 229288 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || ||||||||||||||||||| ||||| || ||| Sbjct 229287 ATGGAGAACCAGGTTTTTCTACCCATTATCACCAGATTCTGTTTACCT 229240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405969743392956