Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq245 113 4e-20 seq5258 89.7 4e-13 seq1743 86.0 5e-12 >seq245 Length=1203420 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || ||||| |||||| | || || | || ||||| || Sbjct 2007 ATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCTTGGAGGTGGAGCCCAGT 1948 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || || ||||| |||||||| ||||| || || Sbjct 1947 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCGGACCAG 1888 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||||| || ||||||| | ||| |||| ||||||||| Sbjct 1887 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGATTACAAC 1828 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || |||| | || || ||||||| || Sbjct 1827 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTCCGCCTGAGGGGTGGGAT 1778 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || || ||||| ||||| || || || || || ||| | | || | |||||||| Sbjct 1362 AAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAG 1303 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || ||||||| | ||| |||| ||||||||||| || |||||||||||| | || Sbjct 1302 CAGCTGGAAGATGGCCGCACCCTTTCTGATTACAACATCCAGAAGGAGTCGACCCTGCAC 1243 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| | || || |||||||||| Sbjct 1242 CTGGTCCTCCGCCTGAGGGGTGGCAT 1217 >seq5258 Length=100039 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| || ||| | | || || || || ||||| || Sbjct 990 ATGCAGATCTTTGTGAAGACCCTGACGGGAAAGACCGTCACGCTCGAGGTTGAACCCTCG 931 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || ||||| || || || ||||| Sbjct 930 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 871 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || || ||||||| | || | || || |||||| Sbjct 870 CAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAAC 811 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| ||| | ||| | || ||| | | || ||||| Sbjct 810 ATTCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACTCCGTGGTGG 764 >seq1743 Length=339712 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||||| | ||| | || || || || || ||||| || Sbjct 2143 ATGCAGATTTTTGTGAAGACCCTGACCAGGAAGACCATCACGCTCGAGGTTGAACCCTCG 2202 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | | || || || || || || ||||| || || || ||||| Sbjct 2203 GACACTATAGAAAATATAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 2262 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || || | ||||| | || | || || |||||| Sbjct 2263 CAGAGACTGATCTTTGCTGGAAAGCAGCTAGAAGATGGCCATACTTTGTCTGACTACAAC 2322 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| ||| | ||| | || ||| | | || ||||| Sbjct 2323 ATTCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACTCCGTGGTGG 2369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434544408231360