Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq3821 129 5e-25 seq24 111 1e-19 >seq3821 Length=151595 Score = 129 bits (142), Expect = 5e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| || |||||||| || || || || || ||||||| || ||||| || | |||| Sbjct 45394 GATCTTCCCCTGATGGCACTGCCTCCCTGTCATGCCCTCTGTCAGTTCTATGTGGTGAAT 45453 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || |||||||| |||||||| || || | || || || ||||| |||| ||||| ||| Sbjct 45454 GGAGAGCTGTCTTGCCAGCTTTACCAGAGGTCAGGTGATATGGGTCTAGGCGTGCCCTTC 45513 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 || || || || || || |||||||| ||||||||||| || Sbjct 45514 AATATCGCCAGCTATGCCCTGCTCACCTACATGATCGCACA 45554 Score = 129 bits (142), Expect = 5e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| || || || || || ||||| ||||| |||| ||| Sbjct 45554 TGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATATTGAAGGGCACGCCTAGACCC 45495 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 || || || || | || || |||||||| |||||||| |||||| | || ||||| || Sbjct 45494 ATATCACCTGACCTCTGGTAAAGCTGGCAAGACAGCTCTCCATTCACCACATAGAACTGA 45435 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| || || || || || |||||||| || ||||| Sbjct 45434 CAGAGGGCATGACAGGGAGGCAGTGCCATCAGGGGAAGATC 45394 Score = 98.7 bits (108), Expect = 9e-16 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | || || || || ||| ||| |||| |||||||| || | ||||| | Sbjct 43831 CCACAAATGCTAAAGAACTGTCCTCCAAGGGAGTGAGAATCTGGGATGCCAATGGGTCCC 43890 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 ||||||||||||||| | ||| ||| | | || |||| || ||| ||||||| || | Sbjct 43891 GAGACTTTCTGGACAGCCTGGGATTCTCTGCCCGACAGGAAGGGGACCTGGGCCCAGTTT 43950 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || ||||||||||| || ||||| || || || Sbjct 43951 ATGGTTTCCAGTGGAGGCATTTTGGAGCAGACTA 43984 Score = 98.7 bits (108), Expect = 9e-16 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||||| || ||||||||||| || || || ||||||| ||| || |||| Sbjct 43984 TAGTCTGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGT 43925 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || | | ||| ||| | |||||||||||||||| ||||| | || |||||||| || Sbjct 43924 CGGGCAGAGAATCCCAGGCTGTCCAGAAAGTCTCGGGACCCATTGGCATCCCAGATTCTC 43865 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || || || || | || |||| Sbjct 43864 ACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGG 43831 >seq24 Length=2736093 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 10/194 (5%) Strand=Plus/Plus Query 6627 TCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTC 6686 ||||||| |||||||| || || || |||||||| || ||||| || |||| Sbjct 845270 TCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTAAAGGGCACACCAGACCCT------- 845322 Query 6687 CCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGG 6746 || | || || ||||| || |||| ||| |||||| | || ||||| | ||||| | Sbjct 845323 --GACCTCTGGTAAAGCTG-CAAGACACCTCTCCATTCACCACATAGAACTCACAGAGAG 845379 Query 6747 TGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGA 6806 ||||| | || || |||||||| || ||||| || |||||||| || ||| | | || Sbjct 845380 CATGGCAATGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACGTGATGA 845439 Query 6807 TCCTTCTGTCATCA 6820 | |||||||||||| Sbjct 845440 TTCTTCTGTCATCA 845453 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 10/194 (5%) Strand=Plus/Minus Query 34525 TGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCT 34584 |||||||||||| ||| | | ||| || |||||||| || ||||| || |||||||| || Sbjct 845453 TGATGACAGAAGAATCATCACGTGTGCCTGGAACCCAAAAGATCTTCCCCTGATGGCACT 845394 Query 34585 CCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCT 34644 || | ||||| | ||||| | ||||| || | |||||| ||| |||| || ||||| Sbjct 845393 GCCTCATTGCCATGCTCTCTGTGAGTTCTATGTGGTGAATGGAGAGGTGTCTTG-CAGCT 845335 Query 34645 CTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCT 34704 || || | || |||| || ||||| || |||||||| || || || || Sbjct 845334 TTACCAGAGGTC---------AGGGTCTGGTGTGCCCTTTAACATTGCCAGCTATGCCCT 845284 Query 34705 GCTCACGTACATGA 34718 |||||| ||||||| Sbjct 845283 GCTCACCTACATGA 845270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447876933558960