Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq4844 159 3e-34 seq959 120 3e-22 >seq4844 Length=112033 Score = 159 bits (176), Expect = 3e-34 Identities = 177/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 1290 ATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAAT 1349 ||||| |||||||| || ||||| |||||||| |||||| ||||| || || Sbjct 91067 ATTGTGACATGGCAGAAGAAGAAAGCCGTGAGCCCAGAGAACATGATCACTTACAGCAAA 91008 Query 1350 GACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGA 1409 ||| |||||||| || ||||| || || | ||| | | | ||||| |||||||| ||| Sbjct 91007 ACCCATGGGGTTGTGGTCCAGCCTGCCTATAGAGACAGAGTAAACATTACTGAGCTGGGA 90948 Query 1410 CTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAG 1469 || ||||| | || |||||||||||||| ||| |||||||||| || ||||||| | Sbjct 90947 CTCTGGAACACGAGCATCACCTTCTGGAACACCACAGTGGATGATGAGGGCTGCTACATG 90888 Query 1470 TGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525 ||| | || || || ||||| ||||||||| | || |||| || || || ||||| Sbjct 90887 TGTCTCTTCAATACCTTTGGTTCTGGGAAGGTCTCGGGAACAGCTTGCCTCACCCT 90832 >seq959 Length=569270 Score = 120 bits (132), Expect = 3e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || || |||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 237577 GTGGTGGAGGAACTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 237636 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| || | || | |||| || ||||| Sbjct 237637 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACAGGGAGATGTCACCCCTGGTGGACAAT 237696 Query 3365 ATTGCCGCGTGGATGACAGACCAGCTGGGTGGAGAGGTTGGTTTGTGGATCCAAGAGAAC 3424 || ||| ||||||||| || | ||| || | || |||||||| || ||| Sbjct 237697 ATAGCCCTGTGGATGACTGAGTACCTGAACGGGAATCTTCACGCCTGGATCCAGGATAAC 237756 Query 3425 GGAGGATGG 3433 ||||| ||| Sbjct 237757 GGAGGCTGG 237765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414129296563252