Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq186 96.9 2e-15 SEQ11613 91.5 1e-13 seq1743 91.5 1e-13 seq1044 91.5 1e-13 seq806 91.5 1e-13 seq4084 87.8 1e-12 seq245 86.0 4e-12 >seq186 Length=1368741 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || || ||||| ||||| || || ||||| ||||| | ||| ||| Sbjct 837224 AAGATGCAGATTTTTGTGAAGACCCTTACGGGGAAGACCATCACGCTCGAGGCTGAATCC 837283 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||||||| | |||| |||| || || || || ||||| | || || ||| Sbjct 837284 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 837343 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || | ||| | || || |||||||| | || ||||| || ||| Sbjct 837344 CAGCAGAGACTGATCTCTGCTGAAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 837403 Query 23788 AACATACAAAAAGAGTCC 23805 ||||| || || |||||| Sbjct 837404 AACATTCAGAAGGAGTCC 837421 >SEQ11613 Length=25137 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || ||||| ||||| || || ||||||||||| ||||| || Sbjct 17382 AAGATGCAGATCTTTGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTTGAACCC 17323 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||||||| | |||| |||| || || || || ||||| | || || ||| Sbjct 17322 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 17263 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTT 23777 || ||| | | || ||||| || || || |||||||| | || ||||| Sbjct 17262 CAGCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTT 17213 >seq1743 Length=339712 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || || ||||| || | || || ||||| ||||| ||||| || Sbjct 2140 AAGATGCAGATTTTTGTGAAGACCCTGACCAGGAAGACCATCACGCTCGAGGTTGAACCC 2199 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||||||| | |||| |||| || || || || ||||| | || || ||| Sbjct 2200 TCGGACACTATAGAAAATATAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 2259 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| || || || || ||||| | | ||||| || ||| Sbjct 2260 CAGCAGAGACTGATCTTTGCTGGAAAGCAGCTAGAAGATGGCCATACTTTGTCTGACTAC 2319 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| ||||| || | ||| | || || || Sbjct 2320 AACATTCAAAAGGAGTCTACCCTTCATCTTGTGTTGAG 2357 >seq1044 Length=525964 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || |||||||| || || || || ||||| ||| | | ||| || Sbjct 399821 AAGATGCAGATTTTTGTGAAAACCCTTACAGGGAAGACCATCACACTCAAGGCTGAACCC 399880 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||||| | |||| |||| || || | || ||||| | || || ||| Sbjct 399881 TGGGACACAATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAGGGATTCCTCCTGAT 399940 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| || || || |||||||| | || ||||| || ||| Sbjct 399941 CAGCAGAGACTGATCTTTGCTGGGAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 400000 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| | ||| | || || || Sbjct 400001 AACATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAG 400038 >seq806 Length=630265 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || || ||||| ||||| || || |||| ||| | | ||| || Sbjct 94975 AAGATGCAGATTTTTGTGAAGACCCTTACGGGGAAGACCATCATGCTCAAGGCTGAACCC 94916 Query 23668 ACGGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||||| | | |||| |||| | || || || || ||||| | || || || Sbjct 94915 TCAGACACTATAGAAAATGTTAAGGC-CAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 94857 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||| | | || ||||| || || || |||||||| | || ||||| || || Sbjct 94856 TCAGCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTA 94797 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 |||||| || || |||||||| | ||| | || || || Sbjct 94796 CAACATTCAGAAGGAGTCCACCCTTCATCTTGTGTTGAG 94758 >seq4084 Length=139134 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 5/203 (2%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || || ||||| | ||| || || ||||| ||||| ||||| || Sbjct 22121 AAGATGCAGATTTTTGTGAAGACCCTTAAGGGGAAGACCATCACGCTCGAGGTTGAACCC 22062 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAA-----AGAAGGTGTACCGC 23722 |||||||| | |||| |||| || || || || |||||| | || | Sbjct 22061 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGATCCAGAAGGAATGCCTC 22002 Query 23723 CAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCG 23782 | ||||| ||| | | || | ||| || || || |||||||| | || ||||| | Sbjct 22001 CTGATCAGCAGAGACTGATCTCTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTG 21942 Query 23783 ATTACAACATACAAAAAGAGTCC 23805 | |||||||| || || |||||| Sbjct 21941 ACTACAACATTCAGAAGGAGTCC 21919 >seq245 Length=1203420 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || ||||| || ||||| ||||| || || ||||| | || || || || Sbjct 2010 AAAATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCTTGGAGGTGGAGCCC 1951 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||| | | || || || ||||| ||||| | || || || Sbjct 1950 AGTGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 1891 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||||||||| || |||||||| | ||||| | |||||| Sbjct 1890 CAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGATTAC 1831 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || ||||| || Sbjct 1830 AACATCCAGAAGGAGTCGAC 1811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337726207786844