Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1868 141 2e-28 seq245 140 8e-28 seq1743 136 9e-27 seq1044 131 4e-25 seq2265 123 6e-23 SEQ68793 114 3e-20 seq584 111 4e-19 seq230 107 5e-18 seq497 96.9 8e-15 SEQ17914 86.0 1e-11 SEQ10534 84.2 5e-11 seq8340 84.2 5e-11 seq457 84.2 5e-11 >seq1868 Length=317776 Score = 141 bits (156), Expect = 2e-28 Identities = 151/197 (77%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||||| ||||| || | ||||||| ||||| | ||||| || | |||||| | Sbjct 104810 AGTCTCAACACAAGATGAGGGATGGATTCGTTTTGAATGTTGTAGTCAGACAAAGTACGG 104869 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| |||||||||||||| ||||| |||| || || || || ||||| |||| | Sbjct 104870 CCATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTAC 104929 Query 225616 TTGTCTTGGATCTT-TTG--CTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || |||||||| ||| ||| ||| ||| || || ||||||| ||| || || | | Sbjct 104930 TTATCCTGGATCTTGTTGGCCTTTACATTTTCTATAGTCTCTGAGGGTTCAACCTCGAGC 104989 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| ||||| ||||| Sbjct 104990 GTGATGGTCTTCCCCGT 105006 >seq245 Length=1203420 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || || || |||| |||||||| | | || | |||||| Sbjct 1796 AGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGGGTGCGGCCATCT 1855 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| || || || ||||||||||| Sbjct 1856 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTCC 1915 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| || |||||||| || ||||| || || ||||| ||| Sbjct 1916 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTC 1975 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||||||| || || | ||| | ||||||||| Sbjct 1976 TTGCCCGTCAGGGTCTTCACGAAGATTTGCATTTT 2010 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| || || | |||||||| |||||||| || || ||||| Sbjct 1592 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATC 1651 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || | || ||||| || ||||||||||||||||| |||||||| |||||| || Sbjct 1652 AGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCA 1711 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 |||||||| || || || || || ||||| |||||||| |||| || || | ||| Sbjct 1712 ATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAG 1771 Query 225706 ACTTGCAT 225713 | ||||| Sbjct 1772 ATCTGCAT 1779 Score = 100 bits (110), Expect = 7e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || || || |||| |||||||| | | || | |||||| Sbjct 1235 AGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGGGTGCGGCCATCT 1294 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| || ||||||||||||||||| Sbjct 1295 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCC 1354 Query 225622 TGGATCTT 225629 |||||||| Sbjct 1355 TGGATCTT 1362 >seq1743 Length=339712 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| ||||||| ||||| || || || || || ||||| | ||||| || | |||||| Sbjct 2364 ACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 2305 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||||||||||||||||| ||||| ||||| |||| || || || || ||||| || Sbjct 2304 ATGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCC 2245 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||| ||| | | ||| || ||||| |||| ||| || || | Sbjct 2244 TTCCTTATCCTGGATCTTGGCCTTTATATTTTCTATAGTGTCCGAGGGTTCAACCTCGAG 2185 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 |||||| ||||| | |||| Sbjct 2184 CGTGATGGTCTTCCTGGTCA 2165 >seq1044 Length=525964 Score = 131 bits (144), Expect = 4e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| ||||||| ||||| || || ||||| || ||||| | ||||| || | |||||| Sbjct 400045 ACGGAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 399986 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||||||||| ||||| |||| || || || || ||||| || Sbjct 399985 ACGGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATCCC 399926 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| | |||||||| ||| ||| ||| || ||||| ||| ||| | | | Sbjct 399925 TTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATTGTGTCCCAGGGTTCAGCCTTGAG 399866 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||| || || | ||||| | || | ||||| || Sbjct 399865 TGTGATGGTCTTCCCTGTAAGGGTTTTCACAAAAATCTGCATCTT 399821 >seq2265 Length=264906 Score = 123 bits (136), Expect = 6e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | ||| || ||| ||||| |||| |||||| |||| | || | ||||| Sbjct 262264 CAGCACCAAGTGCAGGATGGTCTCTTTCTGGATATTGTAGTCGGACTGGGTGCGGCCATC 262323 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| |||||||| || || | || |||||||| || || ||||||||||| Sbjct 262324 CTCCAGCTGCTTGCCAGCGAATATCAGCCTCTGCTGGTCGGGTGGGATGCCTTCCTTGTC 262383 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || |||||| ||| ||| ||||||||||| || ||| | || | ||||| | Sbjct 262384 TTTGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCGTCCTCAAGAGTGATGCT 262443 Query 225681 CTTGCCCGTCAAA 225693 ||||||||||||| Sbjct 262444 CTTGCCCGTCAAA 262456 >SEQ68793 Length=16351 Score = 114 bits (126), Expect = 3e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || |||||| | || || |||||||| || || |||||||| | || || Sbjct 5489 CAAATTTATAATGTTATTGTAACTGCCCATGCCTTCGTCATAATTTTCTTCATGGTAATA 5548 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || | || || || || |||||||||||| |||| || |||| ||||| || |||||| Sbjct 5549 CCTATAATAATTGGAGGCTTCGGAAATTGACTCGTCCCACTAATAATTGGAGCCCCTGAT 5608 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 || || || ||| | | || || ||||| |||||| | ||||| || || || Sbjct 5609 ATAGCCTTCCCACGAATAAATAACATAAGCTTTTGACTCCTACCACCATCGTT 5661 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| |||||| || || || ||||||||||||||||| ||||| ||||| || ||||| | Sbjct 6065 ATACTTCAGGGTGTCCGAAGAATCAGAATAAATGTTGGTAAAGAATAGGGTCCCCTCCCC 6006 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTC 370760 | | |||||||||||| | || |||| |||| Sbjct 6005 CAGCAGGATCAAAAAAGGTTGTGTTAAGGTTTC 5973 >seq584 Length=770825 Score = 111 bits (122), Expect = 4e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| || || | |||||||| |||||||| || || ||||| Sbjct 448349 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATC 448408 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || | || ||||| || || || ||||||||||| ||||||||| ||| ||| || Sbjct 448409 AGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCA 448468 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 |||||||| || || || |||| ||||| || || || || || ||||| | ||| Sbjct 448469 ATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTTTTACCAGTTAAGGTTTTCACGAAG 448528 Query 225706 ACTTGCATT 225714 | |||||| Sbjct 448529 ATCTGCATT 448537 >seq230 Length=1244281 Score = 107 bits (118), Expect = 5e-18 Identities = 142/195 (73%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 || |||| ||| ||||| ||||| ||||| || || || | ||||| || | |||||| Sbjct 668187 ACAAAGT-TCAACACAAGATGGAGGGTGGAGTCCTTCTGAAAGTTGTAGTCAGACAAAGT 668245 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| ||||||||||||| |||| | |||| || || | || ||||| || Sbjct 668246 ACGGCCATCTTCCAGCTGCTTCCCAGGGAAGGTCAGTC--TGCTGAGCAGGAGGAATTCC 668303 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||| ||| || ||| || ||||| || ||| || || | Sbjct 668304 TTCCTTATCCTGGATCTTGGCCTTTCCATTTTCTATAGTGTCGAAGTGTTCAACCTCGAG 668363 Query 225672 CGTGATCGTCTTGCC 225686 | | || ||||| || Sbjct 668364 CATAATGGTCTTCCC 668378 >seq497 Length=839784 Score = 96.9 bits (106), Expect = 8e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||| || || ||||| || || ||||||||||| || || |||||||| |||||||| Sbjct 365935 AATACCTGTCCGTCAGTGATGGAAATAACATTTGTTGGAATGTAAGCAGACACATCACCA 365994 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578 || |||||||| | || |||||||| || | || |||||||||||| Sbjct 365995 GCCTGTGTTTCTATGACTGGTAAGGCAGTCAAAGAGCCACCACCAAAA 366042 >SEQ17914 Length=8076 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 |||||| ||||| | || ||||| || | || | ||||| || |||| ||| || Sbjct 1830 AGTGGACTCTTTCTTGATGTTGTAGTCAGACAGGATGTGGCCATCCTCCAGCTTCTTGCC 1771 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 || ||| || || | | ||||| || || |||||||||||||||||| |||| ||| Sbjct 1770 AGTGAATATCAGCCTCTTCTGGTCAGGTGGGATACCTTCCTTGTCTTGGCTCTTGGCCTT 1711 Query 225636 CACAGCTTCGATGGTGTCTGA--GGTTTCCAC--GTCTAACGTGATCGTCTTGCCCGTCA 225691 ||| | |||||||| | | || || || || | ||||| |||||||| |||| Sbjct 1710 GACATTCTTGATGGTGTGTCACTGGGCTCGACCTTTCAAGAGTGATGGTCTTGCCTGTCA 1651 Query 225692 AAGTTTTTATGAACACTTGCATTTT 225716 ||||||| || | ||||| || Sbjct 1650 GGGTTTTTACAAAGATCTGCATGTT 1626 >SEQ10534 Length=30799 Score = 84.2 bits (92), Expect = 5e-11 Identities = 156/225 (69%), Gaps = 7/225 (3%) Strand=Plus/Plus Query 225494 GAAGTCTCAGGACAAGGTGGAGA-GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||||| | | | || | | ||||| || ||||| | ||||| || |||||| Sbjct 22964 GAAGTCTCACCAGAGGATGAAAAAGTGGACTCCTTTTGAAAGTTGTAGTC----AAAGTT 23019 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||||| | |||||| ||| | |||| || | ||| | || || ||||| | Sbjct 23020 CAGTCATCTTCCACCTGCTTGCCATCAAAGAAGAGCC-TTGGTCATCAGGAGGAATGGAT 23078 Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || ||||| || || || ||| |||||| |||||| || ||| | || Sbjct 23079 TCCTTATCCTGGATTCTTGGCCTTTACATTTTCGATAGTGTCTCAGTGTTCAGTGCTGAA 23138 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 | | || ||||| ||| | | ||||||||||| | ||||| || Sbjct 23139 CATTATAGTCTTCCCCATGAGGGTTTTTATGAAAATCTGCATCTT 23183 >seq8340 Length=48453 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/174 (71%), Gaps = 5/174 (3%) Strand=Plus/Minus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| | || || || || | || || |||||||| |||| ||||||| | | || || Sbjct 5743 CCAAGTCTATAATGTAATCGTAACTGCTCATGCCTTCATTATAATTTTCTCTATAGTAAT 5684 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || | || || || || || |||| | || || ||||| |||||||||||||| Sbjct 5683 ACCTATAATAATCGGAGGATT-----ATTGGCTTGTCCCATTAATAATTGGTGCTCCTGA 5629 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 ||| ||||| ||| | | || || || || || ||| | ||||| ||||| || Sbjct 5628 TATAGCTTTCCCATGAATAAATAACATGAGCTTCTGACTTCTACCCCCTTCATT 5575 >seq457 Length=876281 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/98 (80%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| || |||||||||||||||| |||||| || ||||||||||| || || || | Sbjct 360730 TTCAGGGTGGCCAAAAAATCAGAATAGATGTTGGTAGAGGATAGGATCACCACCTCCAGC 360789 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTA 370769 ||||| | |||| | ||| | || |||| ||||||| Sbjct 360790 AGGATC-AGAAAGATTGTACTTAAGTTTCGGTCAGTTA 360826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191480090702342