Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq3821 141 8e-29 seq24 116 3e-21 seq119 91.5 1e-13 >seq3821 Length=151595 Score = 141 bits (156), Expect = 8e-29 Identities = 126/158 (80%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 29720 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCG 29779 |||| ||| || |||||||| ||||| || | ||||||||||| || |||||||| || Sbjct 45560 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATATTGAAGGGCACGCCT 45501 Query 29780 AGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAA 29839 || ||||| || |||||||||||||| |||||||| || |||||||| | ||| || Sbjct 45500 AGACCCATATCACCTGACCTCTGGTAAAGCTGGCAAGACAGCTCTCCATTCACCACATAG 45441 Query 29840 AACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 |||||||| | |||||| || ||||| || ||||| || Sbjct 45440 AACTGACAGAGGGCATGACAGGGAGGCAGTGCCATCAG 45403 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||||||||| || || || || |||||||| || || | | | ||| Sbjct 43972 AAATGCCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGTCGGGCAGAGAAT 43913 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| |||||| |||||||| ||| || ||||| |||||||| | || ||||| | Sbjct 43912 CCCAGGCTGTCCAGAAAGTCTCGGGACCCATTGGCATCCCAGATTCTCACTCCCTTGGAG 43853 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || || ||||| | |||||||| || Sbjct 43852 GACAGTTCTTTAGCATTTGTGGATCC 43827 >seq24 Length=2736093 Score = 116 bits (128), Expect = 3e-21 Identities = 156/214 (73%), Gaps = 11/214 (5%) Strand=Plus/Plus Query 29733 TCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCC 29792 ||||||| ||||| || | |||||||| |||||||||||||| || || ||| Sbjct 845270 TCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTAAAGGGCACACC-AGACCC------- 845321 Query 29793 CTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGG 29852 |||||||||||| ||||| || || | |||||| | ||| || |||| ||| | | Sbjct 845322 -TGACCTCTGGTAAAGCTG-CAAGACACCTCTCCATTCACCACATAGAACTCACAGAGAG 845379 Query 29853 CATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGA 29912 ||||||| |||| || ||||| || | ||||| ||||||||||||||| ||||| Sbjct 845380 CATGGCAATGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACGTGATGA 845439 Query 29913 TGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTC 29946 | | ||||| || | ||| | ||||| |||| Sbjct 845440 TTCTTCTGTCATCAAGATTGGTTTTGATG-GGTC 845472 >seq119 Length=1622055 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | ||||| | | ||||| |||||| || || Sbjct 229347 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 229288 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||||||||||||||||||| ||||| |||||| Sbjct 229287 ATGGAGAACCAGGTTTTTCTACCCATTATCACCAGATTCTGTTTACCT 229240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405822666807598