Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq486 102 7e-17 seq41 98.7 8e-16 seq847 82.4 7e-11 >seq486 Length=844419 Score = 102 bits (112), Expect = 7e-17 Identities = 121/163 (74%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831 || ||||| || ||||| || || | ||||| ||||||| ||| || ||||||| || Sbjct 515322 GTGAAAACAGACATTCATATAGCTGTTCCTTCTGGGTGCTGTGGAAGAGTAGCTCCACGA 515263 Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891 ||||| ||||| | || | ||| || | || || || || |||||| ||| ||| Sbjct 515262 TCTGGCTTGGCTGCAAAGCTCTTCATAGGTGTAGGAGCTAATGCCATAGATGAAGATTAT 515203 Query 31892 AGAGGAAACGTTGGAATTGTGTTGTTT-AATTTTGGAGAAAAA 31933 |||||||| ||||| ||||| ||||| ||||||||| || || Sbjct 515202 AGAGGAAATGTTGGCCTTGTGCTGTTTAAATTTTGGAAAAGAA 515160 >seq41 Length=2266706 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| || || || |||||||| | |||||||| | || | ||| || Sbjct 1099973 TCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCGGGCATCAGCCCCCGCTTCTTG 1099914 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||| ||||| || |||||||| || ||||| || Sbjct 1099913 AGCCAGAATATCGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCTACCGCTGCAAAGGCC 1099854 Query 4692 AC 4693 || Sbjct 1099853 AC 1099852 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 4817 AATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTG 4876 ||| |||||||| || || || || ||||||||||| ||||| ||||| || ||||| || Sbjct 1098831 AATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTG 1098772 Query 4877 AAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||| || || || || | || ||||| ||||||||||| | | ||||| Sbjct 1098771 AAAGCCATAGAAACAACGGGCCTCTGTGACTTGAACTTCTTGGCTAAATC 1098722 >seq847 Length=614715 Score = 82.4 bits (90), Expect = 7e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 4252 CAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAA 4311 ||||| || || || || |||| || || |||||||| ||||| |||||||| |||| Sbjct 61566 CAAATCGCTGATACTCAGAAACTCTTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAA 61625 Query 4312 TATTTTCCATAAAATCAAACGGATT 4336 | ||||||||||||||||| ||||| Sbjct 61626 TGTTTTCCATAAAATCAAAGGGATT 61650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426691555343069