Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq3821 125 5e-24 seq24 104 2e-17 >seq3821 Length=151595 Score = 125 bits (138), Expect = 5e-24 Identities = 123/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 27214 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 27273 |||| ||| || |||||||| ||||| || | ||||||||||| || ||||| || || Sbjct 45560 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATATTGAAGGGCACGCCT 45501 Query 27274 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAA 27333 || ||||| || || ||||||||||| ||||| || || |||||||||| || || Sbjct 45500 AGACCCATATCACCTGACCTCTGGTAAAGCTGGCAAGACAGCTCTCCATTCACCACATAG 45441 Query 27334 AACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 |||||||| | ||| || || ||||| || ||||| ||| Sbjct 45440 AACTGACAGAGGGCATGACAGGGAGGCAGTGCCATCAGG 45402 Score = 100 bits (110), Expect = 2e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| |||||||| ||||||||||| ||||| || || || || |||||||| Sbjct 43994 CATATCTTTGTAGTCTGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGGCCCAGGTC 43935 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || || | | | ||| ||| |||||| |||||||| ||| || ||||| || Sbjct 43934 CCCTTCCTGTCGGGCAGAGAATCCCAGGCTGTCCAGAAAGTCTCGGGACCCATTGGCATC 43875 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||| | || ||||| ||| || ||||| | |||||||| || Sbjct 43874 CCAGATTCTCACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGGATCC 43827 >seq24 Length=2736093 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 11/214 (5%) Strand=Plus/Plus Query 27227 TCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCC 27286 ||||||| ||||| || | |||||||| ||||||||||| || || || ||| Sbjct 845270 TCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTAAAGGGCACACC-AGACCCT------ 845322 Query 27287 CCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATATGG 27346 ||||||||||| ||||| || || | |||||||| || || |||| ||| | | Sbjct 845323 --GACCTCTGGTAAAGCTG-CAAGACACCTCTCCATTCACCACATAGAACTCACAGAGAG 845379 Query 27347 CGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 27406 | ||||| |||| || ||||| ||| | ||||| ||||||||||| ||| ||||| Sbjct 845380 CATGGCAATGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACGTGATGA 845439 Query 27407 TGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTC 27440 | | ||||| || | ||| | ||||| |||| Sbjct 845440 TTCTTCTGTCATCAAGATTGGTTTTGATG-GGTC 845472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369197399736383